Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) AT1G20680 113 / 9e-30 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2) AT1G20740 105 / 8e-27 Protein of unknown function (DUF833) (.1) AT1G20730 99 / 1e-24 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013833 [exp] 562 / 0 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) Lus10016023 [exp] 288 / 1e-97 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10012251 [exp] 253 / 2e-84 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10016024 [exp] 246 / 2e-81 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 211 / 1e-67 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 114 / 1e-30 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206300 [exp] 366 / 2e-128 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1) Potri.005G252250 [exp] 313 / 1e-107 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10026547 pacid=23164327 polypeptide=Lus10026547 locus=Lus10026547.g ID=Lus10026547.BGIv1.0 annot-version=v1.0 ATGTGTATTGCAGTATTTCTATGGCGAGCTCATCCCCTCCACCCCTTCCTCTTGTTGCTCAACCGAGACGAATTCCACAGTCGACCGACGACGCCGCTGG GATGGTGGAGGAACAACGGAGGAGTTGAAATTCTGGGCGGAAGAGACGAGAAGGCCGGCGGTACGTGGTTGGCCGCCACTAGATATGGTCGAATTGCTTT CATAACTAACGTTCGGGAACTCTCCTCAGCCCCCGCCGCCAATAGCCGAGGTCGCCTCCCGATTCGTTTTTTACAGAGCGACAAGAACCCTTTAGAGTTT GCTGATGAGCTTGTGGAGGAGATGGATAGCTACAATGGGTTTAACCTGGTAGTAGCTGATGTTAGTGCCAAGTCCATGGTTTACATTACCAACAGACCGA AACCAAATTGTCCCGACGTTACAGTTGTTTCACCTGGTATACACGTCCTATCCAATGCTAGCCTTGATACTCCATGGCCCAAGGCAGAAAGACTCAGCCG TAGCTTCAAGGAATTCATGGATAGATACGGTGAACAAGAAGAAGTTCCGGTGAAAGAGATTGTCCAAACATTGATGATGAATAAAATCAAGGATGAAGAT CGAACCTTGCTACCTGGAGTGTATCCTCCTGATTATGAATACCAAGCGAGTTCCATATTTGTTGACATAGATTCCCCATCCGGTCGATATGGGACAAGAA GCACTTCCGCTGTGTTGGTGAGAAGAAGTAGCGAGGTGAACTTTTACGAGAGGTACATTGACGATGAAGAATGGAAGGAGCAGAGTGTCTGTTATACAAT ACTGCAGAAATCAGATGATCTGGTCTTTAGTTCATTACAGTGA
AA sequence Show only first row Show all	>Lus10026547 pacid=23164327 polypeptide=Lus10026547 locus=Lus10026547.g ID=Lus10026547.BGIv1.0 annot-version=v1.0 MCIAVFLWRAHPLHPFLLLLNRDEFHSRPTTPLGWWRNNGGVEILGGRDEKAGGTWLAATRYGRIAFITNVRELSSAPAANSRGRLPIRFLQSDKNPLEF ADELVEEMDSYNGFNLVVADVSAKSMVYITNRPKPNCPDVTVVSPGIHVLSNASLDTPWPKAERLSRSFKEFMDRYGEQEEVPVKEIVQTLMMNKIKDED RTLLPGVYPPDYEYQASSIFVDIDSPSGRYGTRSTSAVLVRRSSEVNFYERYIDDEEWKEQSVCYTILQKSDDLVFSSLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10026547 [exp]	0	1
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	14.9	0.7556
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	22.4	0.7503
AT2G38680			5'-nucleotidases;magnesium ion...		Lus10008973 [exp]	26.6	0.7413
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	28.0	0.7389
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	30.2	0.7439
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	43.5	0.6788
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	48.5	0.7233
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	56.5	0.6626
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	59.4	0.7066
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	61.3	0.6626

Compare expression of checked genes

Lus10026547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.