Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17230 439 / 4e-155 EXL5 EXORDIUM like 5 (.1) AT5G51550 347 / 6e-119 EXL3 EXORDIUM like 3 (.1) AT2G35150 327 / 2e-111 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT4G08950 120 / 2e-31 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT5G64260 119 / 3e-31 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT1G35140 115 / 2e-29 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G09440 94 / 5e-22 EXL4 EXORDIUM like 4 (.1) AT3G02970 56 / 1e-08 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013834 [exp] 569 / 0 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10031130 [exp] 346 / 2e-118 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 332 / 6e-113 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 232 / 6e-75 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10017138 [exp] 219 / 1e-70 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10021370 [exp] 112 / 4e-28 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 111 / 7e-28 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 108 / 6e-27 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10017139 [exp] 102 / 2e-26 AT2G35150 149 / 1e-44 EXORDIUM LIKE 7, EXORDIUM like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206600 [exp] 505 / 0 AT2G17230 481 / 4e-171 EXORDIUM like 5 (.1) Potri.009G167800 [exp] 496 / 2e-177 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.015G129700 [exp] 352 / 6e-121 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 345 / 5e-118 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.015G122100 [exp] 320 / 1e-108 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.014G126000 [exp] 133 / 6e-36 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.005G163000 [exp] 124 / 5e-33 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.002G098600 [exp] 124 / 1e-32 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.001G311700 [exp] 118 / 1e-30 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 116 / 8e-30 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10026548 pacid=23164412 polypeptide=Lus10026548 locus=Lus10026548.g ID=Lus10026548.BGIv1.0 annot-version=v1.0 ATGCCTCTCCTCCATTCCTTCTTCTTCCTCTTCCTCCTCTGCTACACCACCACCAATGTCGCCTCCGCTTCAGAAAAAATCCAGACATTGGAAGTAAAAC CCCAATACTTCAACCCAAAACTCCCACCCAGAACCCTCACCACCAACAAGAAATTCGAAGGCTCCTCCGACCTAGTCCAGCTCAAATACCACATGGGCCC AGTCCTCTCCTCTTCCCCGATCAACGTGTACCTCATCTGGTACGGCCGCTGGCCTAACCCCCAGAAGCTCCTCATCAAGGACTTCATCCACTCCATCTCC CCTTCCGCCGCCGCCCCTTCCCCTTCTGTCTCCCATTGGTGGAAAACCGTCTCCCTCTACACCGACCAAACCGGCGCCAATGTCTCCCGCTCAATCATTG TCGCCGGCGAGTACAACGACCGCTCTTACTCTCACGGCAAGCAACTAACCCGTCTCTCCGTCCAGCAGGTCATCGCCACTGCGGTCCGATCCGCTCCCTT TCCGGTGGATCACAAAAACGGGATCTACCTAATCCTAACGGCGGACGACGTCGGCGTTCAGGACTTTTGTCGAGCAGTTTGCGGGTTCCATTACTTCACT TTCCCGTCCATGGTTGGGTACACTCTGCCTTACGCCTGGGTGGGGAATTCCGGGAAGCAGTGTCCCGAAGTATGCGCTTATCCTTTCGCCGTACCGGGAT ACATGGGCGGAGGTGGGCCAGGAGCGCTGAAGCCGCCGAATGGAGATGTGGGAGTTGACGGGATGATTAGCGTGATTGGGCATGAGCTTGCGGAGCTGTC GACGAATCCGTTGGTGAATGCTTGGTACGCAGGGGAGGATCCGACGGCGCCGACGGAGATTGGGGATCTGTGCGAAGGCTTGTACGGAAGCGGCGGCGGA GGAGGGTACATTGGGCAGGTGATGAAGGATAAGGGAGGGAGGACTTATAATGTGAATGGGAAGAGAGGGAGGAAGTTCTTGGTGCAATGGATCTGGAGCA CTGAGCTCAAAGCTTGCGCTGGTCCCAATGCTTTGGATTGA
AA sequence Show only first row Show all	>Lus10026548 pacid=23164412 polypeptide=Lus10026548 locus=Lus10026548.g ID=Lus10026548.BGIv1.0 annot-version=v1.0 MPLLHSFFFLFLLCYTTTNVASASEKIQTLEVKPQYFNPKLPPRTLTTNKKFEGSSDLVQLKYHMGPVLSSSPINVYLIWYGRWPNPQKLLIKDFIHSIS PSAAAPSPSVSHWWKTVSLYTDQTGANVSRSIIVAGEYNDRSYSHGKQLTRLSVQQVIATAVRSAPFPVDHKNGIYLILTADDVGVQDFCRAVCGFHYFT FPSMVGYTLPYAWVGNSGKQCPEVCAYPFAVPGYMGGGGPGALKPPNGDVGVDGMISVIGHELAELSTNPLVNAWYAGEDPTAPTEIGDLCEGLYGSGGG GGYIGQVMKDKGGRTYNVNGKRGRKFLVQWIWSTELKACAGPNALD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	0	1
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	1.0	0.9183
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	3.7	0.8504
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	4.1	0.8020
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	5.0	0.8249
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	6.7	0.8407
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10011645 [exp]	6.8	0.7856
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	7.2	0.8253
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	10.5	0.8131
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10027880 [exp]	10.7	0.7975
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	14.9	0.8072

Compare expression of checked genes

Lus10026548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.