Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28590 94 / 1e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G31550 94 / 2e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 92 / 5e-23 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28600 92 / 8e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G27360 92 / 1e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28580 89 / 6e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45910 89 / 1e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28660 88 / 2e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28670 88 / 3e-21 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28610 87 / 8e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013938 [exp] 124 / 8e-35 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000523 [exp] 118 / 1e-32 AT1G28590 363 / 6e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019947 [exp] 98 / 5e-25 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015476 [exp] 94 / 6e-23 AT1G28600 315 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10010208 [exp] 92 / 2e-22 AT1G28610 267 / 1e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10024085 [exp] 88 / 2e-21 AT1G31550 321 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 86 / 3e-20 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10033302 [exp] 72 / 3e-15 AT3G48460 454 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034763 [exp] 69 / 2e-14 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064100 [exp] 91 / 2e-23 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G054300 [exp] 88 / 3e-21 AT1G28590 388 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 78 / 1e-17 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.015G089700 [exp] 66 / 3e-13 AT3G48460 478 / 2e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024933 [exp] 64 / 2e-12 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 64 / 2e-12 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 64 / 2e-12 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G242800 [exp] 63 / 2e-12 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024900 [exp] 62 / 6e-12 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 61 / 1e-11 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10026550 pacid=23164219 polypeptide=Lus10026550 locus=Lus10026550.g ID=Lus10026550.BGIv1.0 annot-version=v1.0 ATGCAGGAGGCGGCGAACGGTACGATAATTTCATCCAGCACCATAACGATCTTCTTCGAAAGGAAATTGCTCGGCTACAGTGCCCTTTATCCCAGTACGA ACATTGTGTATGCCGACTATTACAGTTCCTCGATTCGACTCATTCAACTCCCTGAAAAATCTGGGTTCATTGGGTCGGCGAATTCTTCCTGTTGTGGAGG CAAGAACAATAGAAACGAGTTTGTGACTTGTGGGACACCGGGATCGGCAGCTTGCGAGGACCCATCAACTTATGTCTATTGGGATGATCATCATTTTACT GAAGCTGTGTATAAAGCTGTTACTGAGGATGTGTTAGAAGATTCGTTTGCTGTTTCTCGTTCCGATGCCTCTTGTCTTGCGAGTAATTGGACAAGTTACG AGAATGAAAATGATGTGTATTAG
AA sequence Show only first row Show all	>Lus10026550 pacid=23164219 polypeptide=Lus10026550 locus=Lus10026550.g ID=Lus10026550.BGIv1.0 annot-version=v1.0 MQEAANGTIISSSTITIFFERKLLGYSALYPSTNIVYADYYSSSIRLIQLPEKSGFIGSANSSCCGGKNNRNEFVTCGTPGSAACEDPSTYVYWDDHHFT EAVYKAVTEDVLEDSFAVSRSDASCLASNWTSYENENDVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	0	1
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	2.8	0.9902
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	3.0	0.9855
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	3.3	0.9371
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	3.7	0.9269
					Lus10005843 [exp]	4.0	0.9902
					Lus10007169 [exp]	4.0	0.8690
					Lus10022511 [exp]	4.9	0.9902
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	5.7	0.9902
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	6.3	0.9902
AT4G32060			calcium-binding EF hand family...		Lus10040000 [exp]	6.5	0.8202

Compare expression of checked genes

Lus10026550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.