Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35290 996 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 970 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G42540 877 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT1G05200 848 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT3G51480 848 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G32390 776 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 676 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29100 431 / 1e-135 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 421 / 5e-132 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29120 414 / 2e-129 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013837 [exp] 1760 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026553 [exp] 1352 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013838 [exp] 1108 / 0 AT1G42540 859 / 0.0 glutamate receptor 3.3 (.1) Lus10012245 [exp] 904 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 879 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 815 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 810 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10016031 [exp] 806 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10031560 [exp] 754 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168300 [exp] 1134 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102700 [exp] 929 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 904 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G253800 [exp] 901 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.014G152200 [exp] 857 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 849 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 830 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 764 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G013200 [exp] 450 / 1e-142 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 447 / 1e-141 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10026552 pacid=23164209 polypeptide=Lus10026552 locus=Lus10026552.g ID=Lus10026552.BGIv1.0 annot-version=v1.0 ATGAGTTGGGTCTGGGTTGTTTCGATCTTGGTAATGTGCATCATCCCATTGTCACAAGGCTATGACACAGTGAAGCTTGGAGCTATTTTCACATTCAGCA CCACCAACGGGAGAGTCTCAAAGATTGCCATGGAGGCTGCTCAGGATGACATAAATTCTGATCCCACCATTCTCGGTGGACGGAAGCTGTCTATAACGAT GCACGATTCCAACTTCAGTGGATTCCTCGGCTTTGTTGGTGCTTTACGCTTCATGGAGACTGATACTGTTGCCATCATCGGTCCACAATCTTCTGCAATG GCTCGTATTCTTTCGCAAATCACAAACGAACTTCATACTCCTCTCTTGTCATTTACAGCACTGGACCCGTCCATGTCTCCCAGGCAATACCCTTATTTTA TCCAGACAGCTCCAACCGATCTTTACATGGTTGCAGCCATTGCGGATATAATTAGTTACTATCGTTGGCCGGAGGTGATAGTCATTTACAACGACGAGGA TCAGCTCCGGAATGGGATGGACATGCTGCATCCTTTGCTTCTAGAGAGACGCAGCAAGATTTCCTACAAAGCAGCCATTTCCTTTTCTGCAACCAGGAGT GAGGTTCAAGAACTGCTAAATAAGCTTTTGAGCATGAAATCTTGTGTGGTTATTGTCTATACTCGTACTGCAAGCGGCTTGTTGGTTTTCGATGTGGCCC AGAGTCTTGGCATGATAAGGGAAGGATATGTTTGGATAGCTACTACTTGGCTGTCAAATATATTGGACTCAGATCCACTTTTTGCACATAATGCTACTTT CTTCCATGGAGTACTTACACTTAGACCGCACACTCCTGATTCGAAAAAGAAAAGGGATTTCATGCAGCGTTGGGACCATCTCAGCAATGGATCCGTTGGG CTGAATCCATGCGGTCTATACGCCTACGATACTGTCTGGATGATTGCTCGTGCTGTAAGATTGTTTCTGGATCAAGGTAACAACATTTCATTCTCTGATC ACACGAAACTGAATGATCTTAGCCGGGGCACTTTGAATCTCAAAGCTTTAAGTAAGTTTGAGGGAGGAGAAAAGCTGAGAAACAACATATGGGAAACGAA TATGAATGGTGTGACTGGACCTTTTCGGTTTAATCCTGACCGGTCGGTTTGGCACCCTTCCTATGATATCATTAATGTTGTCAATGGTGTTTCTCAGGAC ATAGGATTCTGGTCCAATTACTCCGGGCTGTCTGTTGTTCCTCCAGAGACATTATATGGGAAACCACAAAACCGTTCGAGTTCGAATCAGCATCTTTCGA CTGTGGTGTGGCCAGGAGGAGGGAAGGTTGTGCCTCGTGGTTGGGTGTTTCCTCACAATGGGAAGCCATTGAGGGTTGGAGTTCCGAATAGGAGTATTTT TCGGAGAATCGTTTCAGCAGATAATGGCACTAATGCAGTTCATGGATATTGCATAGATGTCTTCCTTGCTGCCATAAGATTGCTTCCTTATGAACTTCCC TATGAGTTCATTCCTTTTGGTGATGGTCGCAGGAACCCGAATTATTCTCAACTTGTAAATGAGATTCCAGAAGGGGTATTCGATGTTGTTGTCGGCGACA TTTCGATTGTGACAGACAGGACAAAGGTTGTGGATTTTACTCAGCCATTCATAGAGTCAGGGCTGGTTGTTGTAGCTCCTATGAGGAAGCTAAATTCAGG TGCGTGGTCATTCTTGCTGCCATTCACTCCTTCAATGTGGGGCGTCGTAGGGTTGTTCTTCCTCATTGTGGGAGCAGTTGTTTGGCTCCTTGAGCACAGG AGGAATGACGAATTCAGAGGGCCACCCAGACATCAGTTTGTAACGGTTCTCTGGTTTAGCTTCTCCACTTTGTTCATGGCCCATAGGGAAAACGTAGAGA GCCCTCTGGGAAGGTTTGTGCTGATAATCTGGCTGTTTGTAATCCTAATAGTCAACTCTAGCTACACAGCCAGCCTGACATCCATCCTCACAGTTCAACA GATGGCCTCACCCATAAATGGGATTGAATCCTTGGTAACTGCTAATGTAGCCATAGGGTACCAAGTTGGGTCCTTTTCAGGAAAGTACTTGAGTGATGAA CTCAACATTCCCAGGAACAGGCTGATCCCTTTGGGGTCCCAAAAGGAGTTCGATCGTGCTCTTTCGAACGGGACGGTTGCTGCAATAGTCGAAGAAAAAC CTTACATTGATCTTTTCCTTGCCAATCATTGCAAGTTCTCCATACGAGGAGATGAGTTCACCAAGAGCGGCTGGGGATTCGCCTTTAAGAAGGACTCACC GATAGCAGAGGACATGTCGACGGCTATACTGGGACTGTCGGAGAAGGGGGAGCTGGAGAGGATAGGGAAGAAATGGCTGTCGAAGAAGCTGCATTGTCGA GTCCAAAGCGATCCCTCGGATCAATTGGAGCTGGATAGCTTCACGGGACTGTTCCTTGTGTGTGGGACCGTGTGCTTTGTGGCGCTGCTCATCTATCTGT GCTCTACTGTCCGGCAGTTCAGACAACACTGCCCAGTCGAGGCTTGCGAATTCAACCACCATGAACCTGGTGGTTCCTCATCATTATCTACTACTACCAC CACGAGTGGTGGTAGTAGTAAGAGGAGGAGGATGAGGTATGGGGTGAAACGGGTACGGAGGTTCATGTCGTATGTAGATGACAAGAAGGATGTTTGGAAC AACAACAACATCAACACGAATGCGAAGCGGAAGCGTGGAGAGGACGATGAGGATGATACGGTTATGTCAATGCCGTCGTATGAAGTTGGGAGGAAGGATT TACTAGTTTCAGAGGAGCAGCAGCAGGGGCGACATGTACATTTCGTTGGTTCCAGTTCCATGTAG
AA sequence Show only first row Show all	>Lus10026552 pacid=23164209 polypeptide=Lus10026552 locus=Lus10026552.g ID=Lus10026552.BGIv1.0 annot-version=v1.0 MSWVWVVSILVMCIIPLSQGYDTVKLGAIFTFSTTNGRVSKIAMEAAQDDINSDPTILGGRKLSITMHDSNFSGFLGFVGALRFMETDTVAIIGPQSSAM ARILSQITNELHTPLLSFTALDPSMSPRQYPYFIQTAPTDLYMVAAIADIISYYRWPEVIVIYNDEDQLRNGMDMLHPLLLERRSKISYKAAISFSATRS EVQELLNKLLSMKSCVVIVYTRTASGLLVFDVAQSLGMIREGYVWIATTWLSNILDSDPLFAHNATFFHGVLTLRPHTPDSKKKRDFMQRWDHLSNGSVG LNPCGLYAYDTVWMIARAVRLFLDQGNNISFSDHTKLNDLSRGTLNLKALSKFEGGEKLRNNIWETNMNGVTGPFRFNPDRSVWHPSYDIINVVNGVSQD IGFWSNYSGLSVVPPETLYGKPQNRSSSNQHLSTVVWPGGGKVVPRGWVFPHNGKPLRVGVPNRSIFRRIVSADNGTNAVHGYCIDVFLAAIRLLPYELP YEFIPFGDGRRNPNYSQLVNEIPEGVFDVVVGDISIVTDRTKVVDFTQPFIESGLVVVAPMRKLNSGAWSFLLPFTPSMWGVVGLFFLIVGAVVWLLEHR RNDEFRGPPRHQFVTVLWFSFSTLFMAHRENVESPLGRFVLIIWLFVILIVNSSYTASLTSILTVQQMASPINGIESLVTANVAIGYQVGSFSGKYLSDE LNIPRNRLIPLGSQKEFDRALSNGTVAAIVEEKPYIDLFLANHCKFSIRGDEFTKSGWGFAFKKDSPIAEDMSTAILGLSEKGELERIGKKWLSKKLHCR VQSDPSDQLELDSFTGLFLVCGTVCFVALLIYLCSTVRQFRQHCPVEACEFNHHEPGGSSSLSTTTTTSGGSSKRRRMRYGVKRVRRFMSYVDDKKDVWN NNNINTNAKRKRGEDDEDDTVMSMPSYEVGRKDLLVSEEQQQGRHVHFVGSSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	0	1
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	4.2	0.7954
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	6.5	0.7989
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	9.6	0.7984
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	9.9	0.7932
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	10.2	0.7793
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10022368 [exp]	10.9	0.8089
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	16.6	0.7637
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	19.2	0.7272
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	20.2	0.7970
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	20.4	0.7631

Compare expression of checked genes

Lus10026552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.