Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35290 1029 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 1023 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G42540 935 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 902 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G05200 873 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 780 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 695 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29120 459 / 8e-147 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 456 / 6e-146 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 438 / 4e-139 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013838 [exp] 1479 / 0 AT1G42540 859 / 0.0 glutamate receptor 3.3 (.1) Lus10026552 [exp] 1399 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 1381 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10012245 [exp] 947 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 897 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 850 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10016031 [exp] 847 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10039671 [exp] 840 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039672 [exp] 763 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168300 [exp] 1201 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102700 [exp] 981 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 949 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G253800 [exp] 941 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G230000 [exp] 890 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.014G152200 [exp] 889 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 873 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 781 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 490 / 1e-158 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 487 / 2e-157 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10026553 pacid=23164321 polypeptide=Lus10026553 locus=Lus10026553.g ID=Lus10026553.BGIv1.0 annot-version=v1.0 ATGAACTGGGCATGGATTGTCTCGGTGTTAGTTATGTGTATCACTACCCCATTGTCACAAGCATCTGGCACCGTGAAGGTTGGAGCTATTTTCACATTCA GCACCATCAACGGTAAAGTGTCGAAGATCGCCATGGAGGCTGCTGAGAATGACATAAATGCTGATCCTACCATTCTTGGCGGATGGAAACTGTCTTTAAT AATGCACGATTCCAACTTCAGTGGATTCCTTGACTTTGTTGGAGCTTTACGTTTCATGGAGATCGATACTGTGGCCATAATCGGTCCACAATCTTCTGTA ATGGCCCGTGTTCTTTCACAAATCACGAAAGAACTCCAGACTCCTCTCTTGTCGTTTACTGCTTTAGATCCCACCATCTCTCCCTTGCAATACCCTTATT TTATCCAGACAGCTCCAAATGATCTTTTCATGGTCACAGCTATTGCTGACGTAGTTAGGTACTATCAATGGCCGGAGGTGATAGCTATCTACAACGACGA GGATCAAGGCCGGAATGGGATGAACATGCTGGATGATATGCTGCTGGAGAAAGGCAGCAAGCTTTCCTACAAAGCAGCAATTCCTGTGGATGTAACAAGG AGTGAAGTCCAAGCACTGCTAACCAAGTTTTTGAGCATGGAGTCTTGTGTGGTTATCGTCTATACCTATACTCCAAGCGGCTTGTTGGTTTTTGATGTGG CCCGGAGTCTTGGTATGGTGAGGGAAGGATATGTTTGGATAGCTACTACTTGGCTGTCAAATGTATTGGACTCGGGTTCACTTGATGCACAGAATCTCAG CTCCTTCCAAGGGGCTCTCACGTTTCGACCACACACTCCTTATTCCAAACAGAAAAGGGACTTCATAATGCGATGGGATCATCTCAGCAATGGCACTGTT GGTCTGAATCCGTGTGGTCTATACGCCTATGATACTGTCTGGATGATTGCCCGTGCTGTGAGATTGTTTCTGGATCAAGGCAACACCATCTCATTCTCTG ATCACTCAAAACTGAATGATCTAAGCCGGGGGACTTTGAATCTCAAAGCTTTGAGCAAATTTGATGGAGGGGAAATTCTGAGGGACAACATACTGCAGAC AAATATGAATGGCCTGACTGGACCTATTCGGTTTAATCCAGACAGGTCGGTTTGGCATCCTTCCTATGATGTCATTAATGTTGTCAAAGGTGGTTCCCAG CTGATAGGATACTGGTCCAATTACTCTGGACTCTCTGTCGTAACTCCAGAAACATTATATGGATTCCCGTCAAACCGCTCCAGTTCAAACCAACATCTGT CTACTGTGGTGTGGCCTGGAGGAGGAAAAATTGTGCCTCGTGGGTGGGTTTTCCCTCACAATGGAATGGCGTTCAGGATTGGGGTTCCCAATAGAGTTAG CTATCGAGATATCGTAACAATAGGTAATGGAACTAGTGCAGTTCAAGGATATTGCATAGACATTTTCCTTGCTGCTAGGAGATTGCTCCCTTACGAACTT CCCTACGAGTTCGTTCCTTTTGGAGATGGTCAAAAGAATCCAAATTATTATGATCTTATAAATGAGATCGCGACAGGGGTCTTTGATGCTGTTGTTGGTG ACGTTTCAATTGTGAGAGACAGAACAAAGATTGTTGATTTTACTCAGCCATTCACAGAGTCAGGACTGGTTGTGGTAGCTCCTGTTAGGAAGCAGAAATC AAGTGTGTGGGCGTTCTTGCGGCCATTCACTCTTTCAATGTGGGGTATCACAGTGTTGTTCTTTGTCCTTGTTGGATCAGTTGTTTGGCTTCTAGAGCAC AGGACTAATGATGAATTCAGAGGGCCACCTAAACAACAGTTTGTGACAGTTCTCTGGTTTAGCTTCTCCACTCTATTTATGGCCCATCGAGAAAACGTAG ATAGCACTCTGGGTAGGTTTGTGCTGATAATCTGGCTCTTTGTAAGCCTAATAGTCAATTCCAGCTACACTGCCAGCCTGACTTCCATCCTCACAGTGGA GCAGCTGGCCTCACCCATCACTGGAATTGATTCCTTGATAGCTGGAAATGTAGCTATAGGATACCAGGTTGGTTCCTTTGCCGAAAACTATTTGAGAGAT GAACTCAACATTGCTCGGAGCAGACTGGTTCCGTTGGGTTCTCCTGTCGAGTATGCTCGTGCACTCTCAAAGGGAACTGTTGCAGCAATAGTTGATGAAA AGCGTTATGTTGACATCTTCCTTGCCAATCACTGCAAGTTCTCGATACAAGGATTGGAGTTCACTAAAAGAGGCTGGGGATTCGCATTTAGGAAGGATTC CCCGATAGCAGTGGACATGTCGACAGCAATACTGAGACTGTCGGAGAACGGCGAGCTACAGAGACTAGAGAACAAGTGGCTGTCAAGGAAGCCGCATTGC CAGGTTCAGAACGAGTCGTCGGATCAGTTGGAGCTTGAGAACTTCTTGGGGCTGTTTATGGTGTGTGGGATTGCGTGTTTATTAGCGCTGGTGATCTACT TCTGCTTCACAGTTCACCAGTTCAACAACCAACAGTCCCCAGTTGACGGCCGCGGTGGCCAATTTGAAGGCGGCGGTTCGTCGCCACCTTGTAAGAGGAG TAGGGGGAAAATGTGTGGGATGAGGCGGATACGGAGGTTCATGTCGTACGCGGATGGTAAGACGGATGCTTGGAAGATGAAACTGAAGAGGAAACGTGGG GAGGATGATGATGATGCCGTGTTATGA
AA sequence Show only first row Show all	>Lus10026553 pacid=23164321 polypeptide=Lus10026553 locus=Lus10026553.g ID=Lus10026553.BGIv1.0 annot-version=v1.0 MNWAWIVSVLVMCITTPLSQASGTVKVGAIFTFSTINGKVSKIAMEAAENDINADPTILGGWKLSLIMHDSNFSGFLDFVGALRFMEIDTVAIIGPQSSV MARVLSQITKELQTPLLSFTALDPTISPLQYPYFIQTAPNDLFMVTAIADVVRYYQWPEVIAIYNDEDQGRNGMNMLDDMLLEKGSKLSYKAAIPVDVTR SEVQALLTKFLSMESCVVIVYTYTPSGLLVFDVARSLGMVREGYVWIATTWLSNVLDSGSLDAQNLSSFQGALTFRPHTPYSKQKRDFIMRWDHLSNGTV GLNPCGLYAYDTVWMIARAVRLFLDQGNTISFSDHSKLNDLSRGTLNLKALSKFDGGEILRDNILQTNMNGLTGPIRFNPDRSVWHPSYDVINVVKGGSQ LIGYWSNYSGLSVVTPETLYGFPSNRSSSNQHLSTVVWPGGGKIVPRGWVFPHNGMAFRIGVPNRVSYRDIVTIGNGTSAVQGYCIDIFLAARRLLPYEL PYEFVPFGDGQKNPNYYDLINEIATGVFDAVVGDVSIVRDRTKIVDFTQPFTESGLVVVAPVRKQKSSVWAFLRPFTLSMWGITVLFFVLVGSVVWLLEH RTNDEFRGPPKQQFVTVLWFSFSTLFMAHRENVDSTLGRFVLIIWLFVSLIVNSSYTASLTSILTVEQLASPITGIDSLIAGNVAIGYQVGSFAENYLRD ELNIARSRLVPLGSPVEYARALSKGTVAAIVDEKRYVDIFLANHCKFSIQGLEFTKRGWGFAFRKDSPIAVDMSTAILRLSENGELQRLENKWLSRKPHC QVQNESSDQLELENFLGLFMVCGIACLLALVIYFCFTVHQFNNQQSPVDGRGGQFEGGGSSPPCKRSRGKMCGMRRIRRFMSYADGKTDAWKMKLKRKRG EDDDDAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026553 [exp]	0	1
AT5G10650			RING/U-box superfamily protein...		Lus10042443 [exp]	1.4	0.8437
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	4.0	0.8305
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	15.0	0.8002
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	15.5	0.7988
AT1G28250			unknown protein		Lus10014006 [exp]	18.8	0.7941
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	20.6	0.7833
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	22.8	0.7987
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	22.9	0.8075
AT5G06830			unknown protein		Lus10016277 [exp]	25.0	0.8237
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	27.3	0.7754

Compare expression of checked genes

Lus10026553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.