Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17270 472 / 1e-168 PHT3;3 phosphate transporter 3;3 (.1) AT3G48850 322 / 7e-109 PHT3;2 phosphate transporter 3;2 (.1) AT5G14040 322 / 1e-108 PHT3;1 phosphate transporter 3;1 (.1) AT1G07030 83 / 1e-17 Mitochondrial substrate carrier family protein (.1) AT2G30160 81 / 8e-17 Mitochondrial substrate carrier family protein (.1) AT4G01100 80 / 1e-16 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 75 / 1e-14 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G20240 74 / 2e-14 Mitochondrial substrate carrier family protein (.1) AT3G53940 73 / 4e-14 Mitochondrial substrate carrier family protein (.1) AT3G54110 71 / 9e-14 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013839 [exp] 670 / 0 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 399 / 9e-137 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10041519 [exp] 325 / 6e-110 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 322 / 1e-108 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 317 / 9e-107 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 312 / 5e-105 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10042258 [exp] 77 / 1e-15 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 76 / 3e-15 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 74 / 2e-14 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207200 [exp] 508 / 0 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 471 / 4e-168 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.017G060800 [exp] 311 / 3e-104 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 310 / 3e-104 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 303 / 2e-101 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 302 / 4e-101 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.002G168100 [exp] 84 / 5e-18 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.009G077600 [exp] 82 / 3e-17 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.006G099800 [exp] 80 / 2e-16 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.001G282400 [exp] 79 / 3e-16 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10026554 pacid=23164408 polypeptide=Lus10026554 locus=Lus10026554.g ID=Lus10026554.BGIv1.0 annot-version=v1.0 ATGTGGAAGACGCAGGCAGCTGCTGACTCAGGTGGCGCCGTCAGCATATCAGAGATTGCTTCACAGGAGGGGAAGGCCGATAATGAGGAGACAACGAGAG GAAGGGTCCTAATTCATCGCCGTTTTAATGGGGAGGAAGGCTTGTCTTCTCCTGGCCTTTCCTACTATGGGATCTGTGCTCTTGGAGGAATGCTCGGTGC TGGAACCACCCACCTTGCCATCACTCCTCTTGATGTCCTCAAAGTCCATATGCAGGTGAATCCAATCAAGTACAACAGCATCTTGTCAGGATTCTCCACC CTTTGGAAAGAGCAAGGCCCTTCCTCTCTTTGGAGAGGATGGTCTGGCAAGCTGTTCGGATATGGTGCTCAGGGAGGCTGCAAATTCGGCCTTTATGAAT ACTTCAAGAGGGCTTACTCGGATATCTTGCTACATCAAGACAGGACCACCATCTTCTTTCTCAGCAGTGCTTCAGCACAAATATTCGCTGATGTTGCTCT CTGCCCGTTCGAAGCTGTCAAGATCCGTGTCCAAACACAGCCTCATTTCGCCAAGGGATTGACTGATGGATTCCCCAAAATTTACAGGACTGAAGGACTT GCTGGCTTTTATCGCGGGCTTTTTCCACTGTGGGGCCGCAATCTTCCATTCTCTATGGTGATGTTTTCAACTTTTGAGCACTCAGTGGATCTGATATACA ACCACATTGTCCAAAGGCGAAAGGAGGAATGCTCAATACTTCAGCAGCTCGGGGTGACTTGTTTAGCAGGGTACACAGCTGGGGCAGTGGGAACTGTTAT ATCCACACCAGCTGACAACATTGTTAGCTCCCTTTACAACGGGAAAGCAGAATCTGTGCTTCAGGCAGTGAGGAGAATTGGGGTGGCTAATCTTTTCACG CGCAGTCTTCCTATTCGCATTGCTCTTGTTGGACCTGTCGTCACTTTGCAGTGGTTCTTTTACGACACGATCAAAGTACTCAATGGGCTGCCTACCAGTG GCGGGGAGAGCCGGGAACATGAAGATGGGAGCATATCTGCCTAA
AA sequence Show only first row Show all	>Lus10026554 pacid=23164408 polypeptide=Lus10026554 locus=Lus10026554.g ID=Lus10026554.BGIv1.0 annot-version=v1.0 MWKTQAAADSGGAVSISEIASQEGKADNEETTRGRVLIHRRFNGEEGLSSPGLSYYGICALGGMLGAGTTHLAITPLDVLKVHMQVNPIKYNSILSGFST LWKEQGPSSLWRGWSGKLFGYGAQGGCKFGLYEYFKRAYSDILLHQDRTTIFFLSSASAQIFADVALCPFEAVKIRVQTQPHFAKGLTDGFPKIYRTEGL AGFYRGLFPLWGRNLPFSMVMFSTFEHSVDLIYNHIVQRRKEECSILQQLGVTCLAGYTAGAVGTVISTPADNIVSSLYNGKAESVLQAVRRIGVANLFT RSLPIRIALVGPVVTLQWFFYDTIKVLNGLPTSGGESREHEDGSISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	0	1
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	4.0	0.8723
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	4.6	0.8775
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	4.7	0.8327
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	8.9	0.8677
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	12.5	0.8618
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	12.6	0.8639
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	12.6	0.8509
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	13.0	0.8487
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	15.2	0.8711
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	16.1	0.8278

Compare expression of checked genes

Lus10026554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.