Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 877 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 461 / 3e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77340 349 / 2e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 303 / 7e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 294 / 6e-87 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 293 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 283 / 5e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 285 / 1e-84 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 283 / 3e-84 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 280 / 7e-83 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013841 [exp] 1764 / 0 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 546 / 1e-178 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 544 / 1e-174 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 330 / 2e-98 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 324 / 2e-96 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 319 / 1e-94 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 307 / 2e-91 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 298 / 2e-87 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 290 / 3e-84 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 1150 / 0 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 336 / 6e-101 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 330 / 1e-100 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 309 / 4e-94 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 319 / 1e-93 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 310 / 1e-93 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 306 / 7e-91 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 302 / 4e-90 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 299 / 5e-90 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 296 / 2e-89 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026558 pacid=23164272 polypeptide=Lus10026558 locus=Lus10026558.g ID=Lus10026558.BGIv1.0 annot-version=v1.0 ATGAACAAATCTCCGGCGGCTTCTATCGTTGCTGCATCCCAAGTTGTGTCCTCTTCCTTTCCTACCCTTTCATTCAACTCTTCCTTCCGTCACTTCGTCA ACCGATTGCTATCCGTTTCCTCCACCTCGGCAGCCGCCGCTCCTATTCCTTCCTCGGGCAGCGACTCGCCAGACCGACTCGATCTTCCATCTCAGATTCT CGCAGTCCTGTCTCTTCCTAATTGGCAGAAGCACCATTCTATCGGTAAGCTCATCTCGGCCGTTTCTCCTTCTCACGTCTCGTCTCTTCTCCAGGACAAC CCTAATCTCCCTCCGCAGATTGCCCTGGACTTCTTCAATTTCGTTGCTCGGAAGCCCGGGTTCAGGCATGACGTTATGTCTCATTCGATGCTTTTGAATA TTCTGATTCGCAATAAGTTTTTTGGCGTTGCGGAGAAAGTTCGGATTTCAATGATCAAAGTTTGCAATGTGGTTGATGAGGTTCCGTTGGCTTTGAGTTG CCTGCGAGAGATGAACAAAGGGGATGGGGAGGTTGAATTTAAACTCACTGTCAGGACATACAATGAGCTGCTTATGATGTTAGCGAGGTTCTTGATGATT GATGAGCTGAAGAAAGTTTACAGTGAGATGCTCGACGATTTCGTTTCGCCAAACATATACACATTTAATACGATGGTTAATGTGTATTGTAAGGTCGGTA AGGTCGCCGAGGCTGATGTGTACGTGAGTAAGATTTTGCAGGCTGGTTTGAGTCCTGACACCTTTACTTACACTTCGTTGATTCTGGGGCATTGCAGGAA TAATGATGTGAGTAGTGCATTTAGAATATTTAATACGATGCAGAAGAAAGGTTGTAGAAGAAATGCAGTTTCTTACACTGTTCTCATACATGGACTTTGT GAGGCTGGAAGGGTTGATGAGGGTATTGGTTTATTTAAGAAGATGGGTGAAGATAACTGTCTTCCTACTGTTCGAACTTACACGGTTATAATTGATGCAT TACTTGCCAATGGTAGGCGATCAGAAGCAATAGAGTTTTTTAGCAAAATGAAGGAAACAGGGTGTCAACCGAATGTTCATACTTACACTGTTTTGATTGA TGCCATGTGTAAAGAAAAGAAGCTGGAGCAGAGTAGGCAAATGCTAGATCAGCTCACAGAGAAAGGGCTGATTCCCAGTGCGGCTACATATAACGCATTA ATTCAAGGTTATTGCAAAGAGGGTAAGATGGATGCTGCAGTGGGAATCTTTGATATGATGAAGGTGAACAGTTGTAAGCCAAATGAACGTACGTATAATG CGTTGATATATGGATTCTGTGAGACGAAATGTGTGCACAGGGCAATGTCACTATTACAAGGTATGGTTTCTTCTAAGCTAACCCCTAGCCTTGTTACCTA TAATGAGTTGATCCATGGGCAGTGTAAAGTAGGCGATTTAGATAGTGCATTCAAATTGCTTGATTTGATGACCGAGAATAAGGTGGTTCCAGATCATTGG ACATATGGAGTTTTGGTAGATTCACTTTGTAAAAAGAATAGGGTAGAGGAGGCTCGTCTTTTGTTTGATAGCCTGAAGGAGAAAGGGATACAGCCGAATG AAGTAATTTACACTGCATTGATTGATGGATTTTGTAAAGCTGGAAAAGTGGATGATGGTTGTTCTTTGCTGGAAAAGATGCAAAATGAAAATTGTTTGCC AAACTCCTCCACATACAATGCCTTGATAAATGGATTGTGCAGCGAGAGGAAGCTGAAAAAAGCTTTGCAGTTGGTGGCAGATATGGAAAAAGTAGGTTTA AAGCCCACTGTTCAGACATACACTATCCTTATTAAAGAAATGTTGAAAGAAGGTGATTTCGACCATTCATATAAGGTTTTGGATCATATGATTTCCTTGG GATGCAAACCTGACGCCTATACATATACTGCTTTCATCCATGCATACTGTAGCATAGACAACCTCAAAGAAGCAGAGGACACGATGACTAGGATGCTTGA GGCAGGAATAATGCCAGATTCCTTGCCTTATACATTTTTAATTGAATCTTATGGCCGATTGGGATTGACAAATGAAGCATTTAGTGTATTGAAGCGCATG TTTGACAATGGATGTGATCCTTCACACTATTCTTATGCTTTTTTAATCAAGCATCTCTCCAAAGAAGAGTTCGTCAAAGGAAACCTTAACTTCACTGGAT TTGATATGGTGAGTAATACACATTTTTTGGATGTCGCTAATGTGTGGAAGGTCATGAAGTATGAGACTGCTTTATTTCTTCTTGAGAAAATGACAGCGTA TGGATGTTCCCCCACTGTTAGCACTTACAGCAAGCTCATTATTGGACTTTGCAAGGAAAGACGGCTGAACGAAGCTCAGAGGCTACTCGGTCATATGAAT AGCAGAGGTCTATTTCCTAGTGAAGATATCAGTAATTCGCTTCTCTATTGTTGCTGTGAGATGGAAAGGTATGCGGATGCGTTACAACTATTGGATACTA TGATGAAGTATGGCCATTTACCAGCATTGGATTCTTTCCGATTGATAATGTGCGGGTTGTATCTTGAAGGGAATAGCTATAAGGCTAGGGAGGCTTTTTC CTGTTTGCTTCGTTTCCAGTACAATTATGATGAAGTGGCTTGGAAAGTTTTGATTGAAGGTTTGCTCAAAAGGGGTCTTGTTGATGGATGTTCTGAATTG TTGAGCATCATGGAGAAGAGGGGTTGTGATATTCATCCTAAAACTTACACTACGTTAATAGAGAGACTTGATGTGTCATGA
AA sequence Show only first row Show all	>Lus10026558 pacid=23164272 polypeptide=Lus10026558 locus=Lus10026558.g ID=Lus10026558.BGIv1.0 annot-version=v1.0 MNKSPAASIVAASQVVSSSFPTLSFNSSFRHFVNRLLSVSSTSAAAAPIPSSGSDSPDRLDLPSQILAVLSLPNWQKHHSIGKLISAVSPSHVSSLLQDN PNLPPQIALDFFNFVARKPGFRHDVMSHSMLLNILIRNKFFGVAEKVRISMIKVCNVVDEVPLALSCLREMNKGDGEVEFKLTVRTYNELLMMLARFLMI DELKKVYSEMLDDFVSPNIYTFNTMVNVYCKVGKVAEADVYVSKILQAGLSPDTFTYTSLILGHCRNNDVSSAFRIFNTMQKKGCRRNAVSYTVLIHGLC EAGRVDEGIGLFKKMGEDNCLPTVRTYTVIIDALLANGRRSEAIEFFSKMKETGCQPNVHTYTVLIDAMCKEKKLEQSRQMLDQLTEKGLIPSAATYNAL IQGYCKEGKMDAAVGIFDMMKVNSCKPNERTYNALIYGFCETKCVHRAMSLLQGMVSSKLTPSLVTYNELIHGQCKVGDLDSAFKLLDLMTENKVVPDHW TYGVLVDSLCKKNRVEEARLLFDSLKEKGIQPNEVIYTALIDGFCKAGKVDDGCSLLEKMQNENCLPNSSTYNALINGLCSERKLKKALQLVADMEKVGL KPTVQTYTILIKEMLKEGDFDHSYKVLDHMISLGCKPDAYTYTAFIHAYCSIDNLKEAEDTMTRMLEAGIMPDSLPYTFLIESYGRLGLTNEAFSVLKRM FDNGCDPSHYSYAFLIKHLSKEEFVKGNLNFTGFDMVSNTHFLDVANVWKVMKYETALFLLEKMTAYGCSPTVSTYSKLIIGLCKERRLNEAQRLLGHMN SRGLFPSEDISNSLLYCCCEMERYADALQLLDTMMKYGHLPALDSFRLIMCGLYLEGNSYKAREAFSCLLRFQYNYDEVAWKVLIEGLLKRGLVDGCSEL LSIMEKRGCDIHPKTYTTLIERLDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	1.0	0.9268
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	3.9	0.8971
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	5.1	0.9222
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	5.2	0.9017
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	5.7	0.9014
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10036103 [exp]	8.5	0.8623
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	9.5	0.8889
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	11.2	0.8958
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	14.9	0.8784
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	21.2	0.8662

Compare expression of checked genes

Lus10026558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.