Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17290 952 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G35310 938 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT4G38230 883 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT3G10660 742 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 737 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 706 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G09570 705 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 704 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 660 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 647 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013842 [exp] 1127 / 0 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10022986 [exp] 1016 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 1013 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10028862 [exp] 744 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 741 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021248 [exp] 723 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10015992 [exp] 719 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 719 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10013603 [exp] 717 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207300 [exp] 1006 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 999 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.010G244800 [exp] 756 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 752 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 735 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.T012800 [exp] 725 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 725 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.006G200600 [exp] 725 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.013G112500 [exp] 717 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.016G065700 [exp] 714 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10026559 pacid=23164368 polypeptide=Lus10026559 locus=Lus10026559.g ID=Lus10026559.BGIv1.0 annot-version=v1.0 ATGGGCAACACATGCCGTGGATCTTTCAAAGGCAAATTTTATCAGGGCTACAGTCAGCCCGAGGATCTCTCCACAACTTCCAGGCACAATAACCCTACCT CCTCTGACCCTGATATTCATACGGATTCAATCAACAAGGAAGACCAACATTTGCCCATTGTCATAATCCCTAAGGACATCACCATGAGGCGAACCGCTGA CAACCAAGCTTACTATGTTCTAGGCCACAGGACGGCCAACATTCGCGACCTTTACAACTTGGGTCGCAAGTTGGGGCAGGGTCAATTTGGCACTACTTAT CTGTGCACCGATATCTCCACCGGGATCGAGTATGCTTGCAAGTCCATATCCAAGAGGAAGCTCATTTCGAGGGAGGATGTGGATGATGTTCGTAGGGAGA TTCAGATTATGCACCATTTGGCTGGTCATAAGAACATTGTCACTATCAAGGGTGCTTATGAGGACCCTTTGTATGTTCATATTGTCATGGAGCTTTGCTC TGGCGGGGAGTTGTTCGATAGGATCATCCAGAGAGGGCATTATAGTGAGAGGAAAGCAGCTGAGCTCACTAAGATCATTGCAGGTGTTGTCGAGGCGTGT CATTCTCTCGGGGTTATGCATCGTGATCTAAAGCCGGAGAATTTCTTGTTGGTTAATAAAGATGATGACTTCTCTCTCAAGGCCATTGATTTCGGACTCT CCGTGTTTTTCAAACCAGGTCAAATTTTCAGTGATGTTGTGGGAAGTCCATATTATGTTGCACCTGAGGTTCTTCTCAAGCTTTATGGACCAGAAGCTGA TGTATGGACTGCTGGGGTCATTTTGTATATATTGTTAAGTGGAGTGCCACCGTTCTGGGCTGAGACGCAACAAGGAATATTTGATGCAGTCTTGAAGGGA CATATCGACTTCGACTCCGATCCATGGCCTTTGATCTCGGAGAGCGCCAAAGATCTCATTCGCAGGATGCTCTGCTCCAGTCCTAAAGAACGTTTGACTG CTCATGAAGTACTATGTCATCCTTGGATATGCGAAAATGGAGTTGCTCCCGATAGAGCCCTTGATACAGCTGTACTTACACGCCTCAAGCAATTCTCAGC AATGAATAAGCTAAAGAAGATGGCTTTACGGGTGATAGCTGAAAGCCTTTCGGAAGAGGAGATAGCTGGTTTGAAAGAAATGTTCAAATCTATGGACACG GATAGCAGTGGTGCAATAACATTTGATGAACTTAAAGCAGGTTTGCGCAGATATGGTTCAACCATGAAGGATACAGAAATCCGTGATCTTATGGACGCGG CTGATGTTGACAATAGCGGTACCATCGACTACGGTGAATTCATAGCTGCTACGATCCATCTCAACAAGTTAGAACGCGAGGAACATCTTGTTGCGGCGTT CCGGTATTTCGACAAGGATGGAAGTGGTTATATCACCGTGGACGAGCTTCAGCAAGCGTGTGCAGAGCATAACATGACTGATGTTTACATTGAAGATATA ATCAGCGAAGTTGATCAAGATAATGACGGAAGGATTGATTATGCGGAATTTGTGGCAATGATGCAAAAGGGGAATGCAGGCATTGGTAGACGGACTATGC GGAACAGTTTAAATTTGAGTATGAGGGATGCACCTGGTGCTCAGTAA
AA sequence Show only first row Show all	>Lus10026559 pacid=23164368 polypeptide=Lus10026559 locus=Lus10026559.g ID=Lus10026559.BGIv1.0 annot-version=v1.0 MGNTCRGSFKGKFYQGYSQPEDLSTTSRHNNPTSSDPDIHTDSINKEDQHLPIVIIPKDITMRRTADNQAYYVLGHRTANIRDLYNLGRKLGQGQFGTTY LCTDISTGIEYACKSISKRKLISREDVDDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIAGVVEAC HSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFSDVVGSPYYVAPEVLLKLYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKG HIDFDSDPWPLISESAKDLIRRMLCSSPKERLTAHEVLCHPWICENGVAPDRALDTAVLTRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKSMDT DSSGAITFDELKAGLRRYGSTMKDTEIRDLMDAADVDNSGTIDYGEFIAATIHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVYIEDI ISEVDQDNDGRIDYAEFVAMMQKGNAGIGRRTMRNSLNLSMRDAPGAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	0	1
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	1.4	0.8179
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	2.4	0.7949
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	6.7	0.7608
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	6.9	0.7488
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	7.5	0.7601
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	9.2	0.7534
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	13.8	0.7313
AT4G03420			Protein of unknown function (D...		Lus10033707 [exp]	14.5	0.7180
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	17.9	0.7045
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	18.1	0.7457

Compare expression of checked genes

Lus10026559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.