Plant FIBer expression Database

Lus10026561 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35320 117 / 3e-34 unknown protein
AT2G17300 74 / 2e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001621
[exp]
177 / 7e-58 AT4G35320 102 / 1e-28 unknown protein
Lus10022985
[exp]
178 / 1e-57 AT4G35320 105 / 3e-29 unknown protein
Lus10013844
[exp]
172 / 9e-57 AT4G35320 91 / 5e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G207500
[exp]
177 / 7e-58 AT4G35320 110 / 1e-31 unknown protein
Potri.009G168800
[exp]
161 / 2e-51 AT4G35320 113 / 1e-32 unknown protein
PFAM info
Representative CDS sequence
>Lus10026561 pacid=23164396 polypeptide=Lus10026561 locus=Lus10026561.g ID=Lus10026561.BGIv1.0 annot-version=v1.0
ATGAGCTCAATCGTTCAGACCATCCACAAGTCTCGCTCCGCAGCACTTCCAGTCTCCCAATCGGCTAATAATAACGGCGGAGAGAAGGGACTCCGTAGGA
GAATGTCTTCCCTCTCACTCAACCTCCACCCGATCGCCTCCCCAGCGAAGACGTGGGCGATCCACAGATCCAAGTCGCTGTCGGCAATGGGACAAAACGC
CGGCGACTCCATCAAGAGCTGGTGGGAGTGGGGGTTGAGCTGGATCCTGTCGAAGAAGCCCGTGTTCTCCCAAGATCTGGAGATGAACGAGGAGGAGAAG
AAGCTGCTCGGTTCCAGCAACAGGGGAAGCTGGAGGCACATTGTGTACAAGGTTAGGTCAAGGATCAGGAAGGTGATCCCCAGATCTGATAAAGTCGGAC
TCCCCCAGACTTGCAGGTACGATTCTTACAACTACGCCCGCAATTTCGACGACTCCAAGTGA
AA sequence
>Lus10026561 pacid=23164396 polypeptide=Lus10026561 locus=Lus10026561.g ID=Lus10026561.BGIv1.0 annot-version=v1.0
MSSIVQTIHKSRSAALPVSQSANNNGGEKGLRRRMSSLSLNLHPIASPAKTWAIHRSKSLSAMGQNAGDSIKSWWEWGLSWILSKKPVFSQDLEMNEEEK
KLLGSSNRGSWRHIVYKVRSRIRKVIPRSDKVGLPQTCRYDSYNYARNFDDSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G35320 unknown protein Lus10026561
[exp]
0 1
AT4G11090 TBL23 TRICHOME BIREFRINGENCE-LIKE 23... Lus10033950
[exp]
1.0 0.9303
AT4G37680 HHP4 heptahelical protein 4 (.1.2) Lus10011713
[exp]
1.4 0.9211
AT3G53950 glyoxal oxidase-related protei... Lus10024342
[exp]
2.8 0.9056
AT5G15740 RRT1 O-fucosyltransferase family pr... Lus10034651
[exp]
3.5 0.9180
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Lus10009261
[exp]
5.0 0.9028
AT5G06530 AtABCG22, ABCG2... Arabidopsis thaliana ATP-bindi... Lus10012284
[exp]
7.3 0.8920
AT5G53750 CBS domain-containing protein ... Lus10029665
[exp]
8.0 0.8792
AT1G10790 unknown protein Lus10022968
[exp]
8.1 0.8831
AT1G02180 ferredoxin-related (.1) Lus10038068
[exp]
9.2 0.8965
AT5G15740 RRT1 O-fucosyltransferase family pr... Lus10021717
[exp]
9.2 0.8646

Lus10026561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.