Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35335 572 / 0 Nucleotide-sugar transporter family protein (.1) AT5G41760 206 / 3e-63 Nucleotide-sugar transporter family protein (.1.2) AT2G43240 140 / 2e-37 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 137 / 2e-36 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT5G65000 61 / 3e-10 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013845 [exp] 639 / 0 AT4G35335 513 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10037204 [exp] 237 / 3e-75 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 226 / 2e-70 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10025486 [exp] 134 / 2e-35 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 137 / 5e-35 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026182 [exp] 61 / 3e-10 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) Lus10042484 [exp] 54 / 1e-07 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113200 [exp] 574 / 0 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G094600 [exp] 207 / 1e-63 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.003G136800 [exp] 197 / 5e-60 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.008G077300 [exp] 153 / 3e-42 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 145 / 2e-39 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.017G035800 [exp] 141 / 4e-38 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10026562 pacid=23164316 polypeptide=Lus10026562 locus=Lus10026562.g ID=Lus10026562.BGIv1.0 annot-version=v1.0 ATGGAGTACCGCAAAATCAAAGACGAGGATCAATCTGATTCCGGGACTGCTGATGATGACATTGAGAACCTGAGAGGCAAATCGCTTTCAGCTGTTTCAC TTAGTGGTATTGCTGCACTTGGAGCTGGCCCGAACGACCGCTCCAAATGGAAGCGCAAGTCGATCGTCACCCTGGCATTAACTGTTCTTACAAGTTCACA AGCCATCCTGATCGTTTGGTCTAAAAGAGCTGGCAAGTATGAGTACAGTGTCACTACTGCTAATTTCCTGGTGGAGAGTCTGAAATGCATGCTTTCGCTT GCTGCCTTGGCAAGAATATGGAAAAATGAGGGGGTTACAGAAGATAACAGGTTGAGTACAACATTCAATGAAGTGAGTGTCTATCCCGTTCCTGCTGCAC TCTACCTCGTCAAAAATCTGCTACAGTATTACATCTTTGCCTATGTGGATGCTCCAGGTTATCAGATTCTGAAGAACTTTAACATCATCAGCACTGGTAT TTTGTATCGAATGATACTTAAAAGAAAGTTGAGTGAGATCCAATGGGCCGCTTTCATTCTTTTGTGTGCTGGGTGCACCACCGCCCAATTAAATCCTTCG TCTGATCATGTTCTTCAAACCCCTTTTCAAGGTTGGATGATGGCCATTGTAATGGCCCTTTTGAGTGGTTTTGCTGGAGTATACACTGAGGCCATAATGA AGAAGCGTCCTTCCAGGAACATCAATGTTCAGAATTTCTGGTTGTATGTGTTTGGGATGGCTTTCAATGCTATTGCAATACTGATCCAGGATTTTGATGC AGTCATCAACAAAGGATTCTTCCATGGATACTCATTTATTACAGTTCTCATGATTCTCAACCATGCACTAAGTGGGATAGCGGTGTCCATGGTAATGAAA TATGCAGACAACATTGTAAAGGTGTATTCAACTTCAGTAGCAATGCTTCTCACAGCAGTTGTGTCAGTGTTCCTATTTGGCTTTCACCTGTCTCTGGCCT TCTTCCTTGGCTCCACAAGCACCAATAGCTTCACTCAACTTGTCTTGGATTGTGAGACAGCTGAGTCGAGTAGTAATTGTTGTCTCGGTGTCTGTGTATC TGCACTCGGTGGGAAAGCCGCCAAGATAGCGAGTGGTAGACTACGACGAGCCAGCAGTTTGACTTCGTAA
AA sequence Show only first row Show all	>Lus10026562 pacid=23164316 polypeptide=Lus10026562 locus=Lus10026562.g ID=Lus10026562.BGIv1.0 annot-version=v1.0 MEYRKIKDEDQSDSGTADDDIENLRGKSLSAVSLSGIAALGAGPNDRSKWKRKSIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVESLKCMLSL AALARIWKNEGVTEDNRLSTTFNEVSVYPVPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRMILKRKLSEIQWAAFILLCAGCTTAQLNPS SDHVLQTPFQGWMMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAIAILIQDFDAVINKGFFHGYSFITVLMILNHALSGIAVSMVMK YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTSTNSFTQLVLDCETAESSSNCCLGVCVSALGGKAAKIASGRLRRASSLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	0	1
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	1.4	0.9026
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	2.2	0.9135
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	2.8	0.8677
AT3G01810			unknown protein		Lus10041590 [exp]	3.0	0.8795
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	5.0	0.8780
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	5.3	0.8792
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10010692 [exp]	6.5	0.8435
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	9.7	0.8207
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	12.8	0.8544
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	14.5	0.8662

Compare expression of checked genes

Lus10026562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.