Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35360 541 / 0 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 529 / 0 Uncharacterised conserved protein (UCP030210) (.1) AT2G17320 503 / 4e-179 Uncharacterised conserved protein (UCP030210) (.1) AT4G32180 169 / 7e-46 ATPANK2 pantothenate kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013846 [exp] 693 / 0 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10009520 [exp] 177 / 1e-48 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 108 / 4e-25 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169000 [exp] 556 / 0 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.004G207700 [exp] 542 / 0 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.012G081600 [exp] 167 / 3e-45 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.015G077300 [exp] 165 / 1e-44 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [flax] [poplar] DUF89 Protein of unknown function DUF89
Representative CDS sequence Show only first row Show all	>Lus10026563 pacid=23164421 polypeptide=Lus10026563 locus=Lus10026563.g ID=Lus10026563.BGIv1.0 annot-version=v1.0 ATGGAGAGAGATTCGGAGATGGTTCCATTCCCGCTGCTGTTGACGCCGATCGAGACCAACTACAGGGCATGTACCATTCCCTACAGGTTCCCTTCCGACA ATCCTAGAAGACCTACCCCAACTGAGCTCCAGTGGATCAACCTCTTCCTCAATTCCATTCCCTCTTTCAAGTACTCTGAGATACTTGAGGACTTCAAGAA AGATCCAGAAAGCCATGCTGGACCACCTGATTGCATTCTACTCTGTAGATTGAGGGAGCAAATCCTTCGAGAATTGGGATTCCGAGACATATTCAAGAAG GTCAAGGATGAAGAGAATGTCAAGGCTATATCACTGTTTAAAGAGGTGACTCGTCTTAATGATTCAATTGAAGAAGGGCCAAAGCGAGTAGAGAATCTGG CTCGGGGAATATTTGCAGGAAACATATTTGACCTCGGTTCTGCCCAGCTTGCTGAGGTGTTCTCAAGGGATGGAATATCCTTCTTGGCTAGTTGTCAAAA TATTCTCCCTCGGCCATGGGTTATTGATGACCTAGAGGCTTTTAAAGTTAGATGGAGCAAGAAATCCTGGAAGAAGGCAAGTTCCAGATCTTTCTTTCTC CAAGCTCCTTATTCTGTTCTGCTGTTCCAATTCCACCACAATATGTGTTTCACTTCCTTCAAAGCTATCATCTTCGTGGATAATTCAGGTGCAGATATCA TCCTGGGTATTTTACCTTTTGCAAGAGAACTACTTCGGCGTGGAACTCAGGTTGTATTGGCTGCCAATGACTTGCCTTCTATAAACGACATCACATACCA TGAGCTTATTGAGATTATATCAAAGTTGAAAGATGAGAACGGGAAGCTCGAGGGTGTTGATGCCTCAAACATTCTAGTTGCCAATTCTGGGAATGATCTA CCAGTAAGAACTACTTCCATCACTCAACCTCTGGCTGCTGTATCATTTCACTCGTTGACTTTCTTCTTCTCTTTGGCATTCTGCAAGGTTATCGATTTAG CGAGTGTATCTCAAGAGCTAGCCTATTTAGCCAGTGATGCAGACCTAGTAGTCTTGGAAGGAATGGGCCGTGGGATAGAGACCAATCTTTATGCTCAGTT CAGGTGTGATTCACTCAAGGTTGGGATGGTGAAACACCCAGAAGTTGCTCAGTTTCTTGGAGGAAGACTCTATGATTGCGTTTTCAAGTACAACGAGGTC TCGACTTAG
AA sequence Show only first row Show all	>Lus10026563 pacid=23164421 polypeptide=Lus10026563 locus=Lus10026563.g ID=Lus10026563.BGIv1.0 annot-version=v1.0 MERDSEMVPFPLLLTPIETNYRACTIPYRFPSDNPRRPTPTELQWINLFLNSIPSFKYSEILEDFKKDPESHAGPPDCILLCRLREQILRELGFRDIFKK VKDEENVKAISLFKEVTRLNDSIEEGPKRVENLARGIFAGNIFDLGSAQLAEVFSRDGISFLASCQNILPRPWVIDDLEAFKVRWSKKSWKKASSRSFFL QAPYSVLLFQFHHNMCFTSFKAIIFVDNSGADIILGILPFARELLRRGTQVVLAANDLPSINDITYHELIEIISKLKDENGKLEGVDASNILVANSGNDL PVRTTSITQPLAAVSFHSLTFFFSLAFCKVIDLASVSQELAYLASDADLVVLEGMGRGIETNLYAQFRCDSLKVGMVKHPEVAQFLGGRLYDCVFKYNEV ST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	0	1
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	2.4	0.8291
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	5.5	0.8105
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10005447 [exp]	6.0	0.8149
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	9.9	0.7798
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10042119 [exp]	14.1	0.7540
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	15.9	0.7884
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	18.7	0.8059
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	28.4	0.7912
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	31.0	0.7772
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	32.1	0.7542

Compare expression of checked genes

Lus10026563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.