Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17350 164 / 8e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013847 [exp] 175 / 4e-58 AT2G17350 189 / 9e-64 unknown protein Lus10022984 [exp] 151 / 1e-48 AT2G17350 177 / 6e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169200 [exp] 167 / 4e-55 AT2G17350 144 / 8e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026564 pacid=23164346 polypeptide=Lus10026564 locus=Lus10026564.g ID=Lus10026564.BGIv1.0 annot-version=v1.0 ATGTCACTCAGGATAAAGGCGGTGGTGGACAAATTCGTGGAGGAGCTGAAAGAAGCACTGGATGCCGACATCCAAGACCGTCTTATGAAGGAAAGGGAGA TGCAGAGTTACATCGAAGAGCGCGAACGCGAGGTCGCCGAGCGTGAAGCTGCTTGGAAGGCCGAGCTTTCTCGCCGCGTGGCCGAAATCGCTCGACAAGA AGCAAGGCTGAAGATGGAGAAAGAAAATCTGGAGAAAGAGAAGAGCGTGCTGATGGGGACAGCATCGGGCCAAGATAACCAAGATGGAGCTCTCGAAATA ACCGTGAGCGGGGAGAAGTACCGATGCTTGAGATTCTCCAAGGCCAAGAAATGA
AA sequence Show only first row Show all	>Lus10026564 pacid=23164346 polypeptide=Lus10026564 locus=Lus10026564.g ID=Lus10026564.BGIv1.0 annot-version=v1.0 MSLRIKAVVDKFVEELKEALDADIQDRLMKEREMQSYIEEREREVAEREAAWKAELSRRVAEIARQEARLKMEKENLEKEKSVLMGTASGQDNQDGALEI TVSGEKYRCLRFSKAKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17350			unknown protein		Lus10026564 [exp]	0	1
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	4.7	0.8871
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040727 [exp]	9.2	0.8505
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	11.0	0.8710
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	11.7	0.8856
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	14.5	0.8581
AT3G51940			unknown protein		Lus10039572 [exp]	14.7	0.8569
AT5G47090			unknown protein		Lus10035047 [exp]	15.1	0.8838
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010764 [exp]	15.4	0.8776
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	15.7	0.8766
AT5G11680			unknown protein		Lus10027000 [exp]	17.0	0.8776

Compare expression of checked genes

Lus10026564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.