Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38220 606 / 0 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) AT1G44180 510 / 3e-180 Peptidase M20/M25/M40 family protein (.1) AT1G44820 508 / 2e-179 Peptidase M20/M25/M40 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013848 [exp] 762 / 0 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10042502 [exp] 504 / 2e-177 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10038151 [exp] 499 / 3e-175 AT1G44820 622 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10040090 [exp] 44 / 0.0003 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10030957 [exp] 44 / 0.0003 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169300 [exp] 668 / 0 AT4G38220 646 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.004G208100 [exp] 650 / 0 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.002G085500 [exp] 523 / 0 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085400 [exp] 521 / 0 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.001G143200 [exp] 45 / 6e-05 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.003G091100 [exp] 43 / 0.0005 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10026565 pacid=23164239 polypeptide=Lus10026565 locus=Lus10026565.g ID=Lus10026565.BGIv1.0 annot-version=v1.0 ATGGAGCCAATCAAGCTCACTTCCACTCTTCTTCCCCTCCTCCTCTGCCTCATCTTCTCCCCAACTCCACCGTTTTCATCCGCCTCCTCCTCCTCCTCCT CTGGCGAAATAATCTCCCGGTTCCAACAATACCTCCAGATCAACACCGCTCAGCCAACCCCAAACTACTACCAAGCCGCCGAATTCCTCACCTCTCAAGC CGATTCCCTTTCCCTCCACACCCGCTCCCTCGAATTCGTCCCCGGCAAACCATTACTTCTCATCCACTGGCCCGGCTCCGACCAATCCCTCCCTTCCATC CTCCTCTACTCCCACACCGACGTCGTCCCCTCCGAACCAGACAAGTGGGACCACCCTCCTTTCTCCGCCCACCTCGATTCCCATGGCCGCATCTTCGCCA GAGGATCCCAGGACATGAAGTGCGTCGGTATGCAGTACCTCGAGGCCGTTCGCCGCCTCAAGGCCTCCGGTTACCAGCCCCTCCGCTCCATCTACCTCGC TTTCGCCCCCGATGAGGAAATCGGCGGGCACGATGGCGCTGAGTTGTTCGCCCAGTCTGAAGCCTTCAGCAGCTTGAACGTTGGCGTGGTCCTGGATGAA GGGCTGGCGTCGCCCGCTGATAATTACAGAGTTTTCTATGCTGAAAGGAGCCCATGGTGGCTGGTGATTAAGGCTACTGGAGCTCCTGGACATGGGGCAA AGCTCTATGACAATAGTGCCGTGGAGAATCTGTTCAAGAGCATTGAAGCAGTTAGAAGGTTTAGGGCTTCTCAGTTTGACTTGGTGAAAGCTGGCTTGAA GGGTGAAGGAGAGGTCATTTCTGTTAACATGGCTTTCCTCAAGGCTGGCACTCCTTCTCCCACTGGATTTGTCATGAATCTGCAGCCATCTGAAGCAGAA GCAGGGTTTGATATTCGCATCCCACCAACCGCTGATCCCGAATCATTGGAAAGACGGATTGCTGAAGAGTGGGCACCTGCTTCACGCAACATGACATTCC AGCTTGGACAGTTCAAGCAAAAGACTCCCTTGTGTGACAATGCGGGGAAGCCAAAGCTGACAAAGACGGGGAGTTCTAACCCATGGTGGATCCTATTTGA GGAAGCTGTAGGAAAAGCTAAAGGAAAACTTGCTAAGCCAGAAATATTTCCTGCTGCAACAGACTCTCGATACTTCCGGGAACGAGGTCTTCCCGCGATT GGCTTCTCCCCTATGTCCAACACGCCTATCCTTTTGCATGATCATAATGAGTTCTTGAGCCAGGATGAGTATCTGAAAGGGATTGAGGTCTACGAATCAA TAATTAAAACTTTTGCCTCTTCGTCTGATCATATTGGCACAGAAGACCGCAGAGATGAGCTGTAG
AA sequence Show only first row Show all	>Lus10026565 pacid=23164239 polypeptide=Lus10026565 locus=Lus10026565.g ID=Lus10026565.BGIv1.0 annot-version=v1.0 MEPIKLTSTLLPLLLCLIFSPTPPFSSASSSSSSGEIISRFQQYLQINTAQPTPNYYQAAEFLTSQADSLSLHTRSLEFVPGKPLLLIHWPGSDQSLPSI LLYSHTDVVPSEPDKWDHPPFSAHLDSHGRIFARGSQDMKCVGMQYLEAVRRLKASGYQPLRSIYLAFAPDEEIGGHDGAELFAQSEAFSSLNVGVVLDE GLASPADNYRVFYAERSPWWLVIKATGAPGHGAKLYDNSAVENLFKSIEAVRRFRASQFDLVKAGLKGEGEVISVNMAFLKAGTPSPTGFVMNLQPSEAE AGFDIRIPPTADPESLERRIAEEWAPASRNMTFQLGQFKQKTPLCDNAGKPKLTKTGSSNPWWILFEEAVGKAKGKLAKPEIFPAATDSRYFRERGLPAI GFSPMSNTPILLHDHNEFLSQDEYLKGIEVYESIIKTFASSSDHIGTEDRRDEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	0	1
AT1G64700			unknown protein		Lus10017341 [exp]	2.0	0.8975
AT5G24460			unknown protein		Lus10015572 [exp]	4.0	0.8945
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	4.5	0.8765
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	5.5	0.8807
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	6.3	0.8784
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	8.5	0.8434
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	10.6	0.8492
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	12.0	0.8710
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10031587 [exp]	13.4	0.8473
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	16.5	0.8333

Compare expression of checked genes

Lus10026565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.