Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38210 287 / 5e-98 ATHEXPALPHA1.23, ATEXP20, ATEXPA20 EXPANSIN 20, expansin A20 (.1) AT3G03220 235 / 3e-77 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT3G55500 226 / 1e-73 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 225 / 2e-73 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G02260 224 / 3e-73 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G37640 223 / 8e-73 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 222 / 2e-72 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 212 / 2e-68 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 211 / 5e-68 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 210 / 8e-68 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013849 [exp] 450 / 4e-162 AT4G38210 279 / 7e-95 EXPANSIN 20, expansin A20 (.1) Lus10027304 [exp] 240 / 3e-79 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10039009 [exp] 239 / 6e-79 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1) Lus10010454 [exp] 237 / 5e-78 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10003822 [exp] 235 / 3e-75 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10024388 [exp] 229 / 6e-75 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10040801 [exp] 228 / 2e-74 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 227 / 3e-74 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10036763 [exp] 224 / 3e-73 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208300 [exp] 341 / 6e-118 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1) Potri.009G169500 [exp] 336 / 3e-117 AT4G38210 335 / 5e-117 EXPANSIN 20, expansin A20 (.1) Potri.008G057100 [exp] 232 / 2e-76 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 229 / 3e-75 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.004G080200 [exp] 229 / 7e-75 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.008G088300 [exp] 226 / 4e-74 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G240900 [exp] 226 / 7e-74 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 226 / 9e-74 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G001100 [exp] 225 / 9e-74 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 225 / 3e-73 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10026566 pacid=23164377 polypeptide=Lus10026566 locus=Lus10026566.g ID=Lus10026566.BGIv1.0 annot-version=v1.0 ATGAGGTACTCCTCTCTTCACCAAATCCTCCTCCTCTGCTTCATCTCAATCAACATTACCACCACCACCACCACCACCGTATTTACCTACGACGATGGAA ACCCCACTTCCGCATCCCATGAAGGCGAAGGCGAATGGAAGTCCGCCACCGCCACCTACATCAAACAACCCGACGGAGGCTCCATCTCTCTCGGGGGAGC GTGCGGATACGGCGACGTATTGCACGCCTTGACATACGGCAGCTACAGCGCCGGATTAAGCGCAATGCTCTTCAACCGAGGCAGCACCTGCGGCGCGTGC TTCCAAATCAGGTGCGTGGACCACATCCTCTGGTGCCTCCAAGGCAGCCCGTCCGTCACCCTCACCGCCACCGACTTCTGCGCTCCCAACTACGCCCTCT CAGCCGACTACGGCGGGTGGTGCAACTTTTCCAAGCGACACTTCGAGCTCTCCGAGTCGGCATTCGCCGAGATCGCGGACGTTAAGAAGGCGGACATCGT CCCCGTCCAGTACAGGAAGGTGAAGTGCAACAGAGAAGGCGGCGGGGTGCTGAGTACCAACGTCGCAGGCGACGGCGAGGTGGTCGGAGTTAAGTGGAAA GGTCGGCGGACCGGGTGGATTCCGATGGCGAGGAATTGGGGGCAGAACTGGCAGTGTTTTGTAGACCTAATTGGGCAGCCGCTTTCGTTTGAGGTCACGA CTAGCGATGGTAAAACTGTGGCGTCTTACAATGTTGCTCCTTCAAACTGGATGTTTGGCCAGACGTTCCAAGGGAAACAATTCTCTGGTTAA
AA sequence Show only first row Show all	>Lus10026566 pacid=23164377 polypeptide=Lus10026566 locus=Lus10026566.g ID=Lus10026566.BGIv1.0 annot-version=v1.0 MRYSSLHQILLLCFISINITTTTTTTVFTYDDGNPTSASHEGEGEWKSATATYIKQPDGGSISLGGACGYGDVLHALTYGSYSAGLSAMLFNRGSTCGAC FQIRCVDHILWCLQGSPSVTLTATDFCAPNYALSADYGGWCNFSKRHFELSESAFAEIADVKKADIVPVQYRKVKCNREGGGVLSTNVAGDGEVVGVKWK GRRTGWIPMARNWGQNWQCFVDLIGQPLSFEVTTSDGKTVASYNVAPSNWMFGQTFQGKQFSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10026566 [exp]	0	1
					Lus10002045 [exp]	3.3	0.9815
AT5G66440			unknown protein		Lus10025994 [exp]	3.5	0.9802
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	4.9	0.9794
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	7.5	0.9700
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	8.5	0.9784
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019105 [exp]	9.2	0.9612
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	10.0	0.9748
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10014302 [exp]	11.2	0.9569
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	11.3	0.9694
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	12.1	0.9583

Compare expression of checked genes

Lus10026566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.