Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76490 738 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) AT2G17370 698 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013850 [exp] 850 / 0 AT1G76490 740 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208500 [exp] 751 / 0 AT1G76490 808 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.002G004000 [exp] 745 / 0 AT1G76490 908 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.009G169900 [exp] 744 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.011G145000 [exp] 743 / 0 AT1G76490 845 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.001G457000 [exp] 743 / 0 AT1G76490 833 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.005G257000 [exp] 719 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00368 [flax] [poplar] HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence Show only first row Show all	>Lus10026567 pacid=23164258 polypeptide=Lus10026567 locus=Lus10026567.g ID=Lus10026567.BGIv1.0 annot-version=v1.0 ATGGAGGATGAGGAGATCGTCAATTCCGTACTTTCCGGGTCGATTCCTTCCTACTCGCTCGAATCAAAATTAGGGGATTGCAAGCGCGCCGCCGGAGTCC GACGCGAGGCTCTACAGAGGATCACGGGACGTTCTCTCGCCGGATTGCCCCTCGACGGATTCGATTACGATTCAATTTTAGGTCAGTGCTGCGAAATGCC TGTAGGATACATCCAGATCCCCGTGGGGATCGCGGGGCCTCTGTTGCTCGACGGTAGAGAATATTCTGTCCCCATGGCCACCACCGAAGGCTGTTTGGTC GCCAGCACGAATCGCGGATGCAAGGCGATTCACTTGTCCGGCGGAGCTAGCAGCGTGCTGTTGAAAGACGGGATGACGAGAGCTCCTGTCGTCAGATTCG CAACCGCCAAAAGAGCAGCATATCTCAAGATGTACCTGGAGGATCCGCTGAATTTCGAATCGTTGTCGTTGGTTTTCAACAAATCCAGCAGATTCGCCAA GCTCCAGAGCGTGAAGTGCTCCATCGCTGGGAAGAATCTCTACCTTCGATTCTGCTGCAGCACAGGGGATGCCATGGGGATGAACATGGTCTCTAAAGGT GTTCAGAACGTGTTGGATTTCCTCCAGAATGATTTCTCTGACATGGACGTCATCGGCATCTCCGGAAATTTCTGCTCGGACAAGAAGCCGGCAGCGGTGA ATTGGATAGAAGGGAGGGGGAAGTCAGTGGTGTGCGAGGCAATAATCAAAGGGGAAGTGGTGAAGAAGGTGTTGAAGACGAGTGTTGAATCTTTGGTGGA GCTTAACATGCTAAAGAACTTAACAGGTTCAGCCATGGCAGGAGCTCTTGGTGGGTTCAATGCTCATGCTAGTAACATCGTATCTGCTGTCTACATAGCT ACAGGACAAGATCCAGCTCAGAACATTGAGAGCTCCCACTGTATCACCATGATGGAAGCTGTGAATGATGGGCTGGATCTGCATGTATCAGTAACCATGC CGTCCATCGAGGTAGGAACAGTGGGAGGTGGGACGCAATTGGCATCACAAGCAGCGTGCTTGAACTTGCTAGGGGTGAAAGGAGCGAGCAAAGAGACACC TGGAGCAAACGCAAGGCTATTGGCGACCATAGTGGCGGGATCAGTTCTTGCCGGTGAGCTGTCGTTGATGTCGGCACTCGCAGCAGGACAGCTGGTGAAG AGCCACATGAAGTACAACCGTTCCAGCAAGGATGTCACCACCATGGCTGCTTCCTCCTAA
AA sequence Show only first row Show all	>Lus10026567 pacid=23164258 polypeptide=Lus10026567 locus=Lus10026567.g ID=Lus10026567.BGIv1.0 annot-version=v1.0 MEDEEIVNSVLSGSIPSYSLESKLGDCKRAAGVRREALQRITGRSLAGLPLDGFDYDSILGQCCEMPVGYIQIPVGIAGPLLLDGREYSVPMATTEGCLV ASTNRGCKAIHLSGGASSVLLKDGMTRAPVVRFATAKRAAYLKMYLEDPLNFESLSLVFNKSSRFAKLQSVKCSIAGKNLYLRFCCSTGDAMGMNMVSKG VQNVLDFLQNDFSDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYIA TGQDPAQNIESSHCITMMEAVNDGLDLHVSVTMPSIEVGTVGGGTQLASQAACLNLLGVKGASKETPGANARLLATIVAGSVLAGELSLMSALAAGQLVK SHMKYNRSSKDVTTMAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	0	1
AT3G27090			DCD (Development and Cell Deat...		Lus10012533 [exp]	1.0	0.9283
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	2.8	0.9204
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	3.0	0.9030
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	4.7	0.8989
AT1G01225			NC domain-containing protein-r...		Lus10030231 [exp]	6.6	0.8880
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	7.1	0.9165
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	8.1	0.8802
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	9.2	0.9114
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	10.2	0.9159
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	10.8	0.8967

Compare expression of checked genes

Lus10026567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.