Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38190 1793 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 1597 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1569 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT1G02730 1332 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1326 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1130 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G09870 772 / 0 CESA5 cellulose synthase 5 (.1) AT2G25540 772 / 0 CESA10 cellulose synthase 10 (.1) AT4G39350 761 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G44030 477 / 3e-150 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013851 [exp] 2187 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1880 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10009248 [exp] 1525 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1414 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1344 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 1295 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1236 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 1172 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10025046 [exp] 1164 / 0 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208800 [exp] 1849 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.009G170000 [exp] 1847 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.019G049700 [exp] 1606 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1579 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1426 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1423 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 1353 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1314 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1308 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1284 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10026568 pacid=23164405 polypeptide=Lus10026568 locus=Lus10026568.g ID=Lus10026568.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTGTCTTCCCAGCCATCAAAGAAGGCAATGCGCACCCCTGGCGCCCAGCAGGGCGGCGGAAGCGGCAGTCGCAACCCCGGCCAGACTGTGA AATTCGCGAGGCGGACGTCGAGCGGTAGGTATGTCAGTCTGTCCAGGGAGGATCTCGACATGTCCGGCGAGTTATCGGGGGACTACATGAACTACACCGT CCATATCCCTCCGACCCCCGACAACCAGCCGATGGAGACCTCGTCGGTTGCGGCCAAGGCCGAGGAACAATACGTGTCGAATTCCCTGTTCACGGGAGGT TTCAACAGCGTCACTCGCGCCCATCTGATGGACAAGGTTATCGAATCCCATGTTAGTCACCCTCAGATGGCCGGAGCCAGGGGATCCTCCTGCGCTATGC CCGCCTGCGACGGCAAGGTCATGAAGGACGAGCGCGGCAATGACGTCACCCCTTGCGAATGCAGATTCAAGATATGCAGAGACTGCTACTTGGACGCATC GAAGGACAGTGGGCTATGTCCAGGTTGCAAGGAGCCATACAGAGTCGACGACTACGACGATGAAATCCCGAACTTCTCCAAGGGAGCATTGCAGTTGCCT CCTCCGAACAAAGGCGAATCCAGCAACAACATGTCCGTCATGAAACGCAATCAGAACGGCGAGTTCGATCACAACCGTTGGCTATTTGAGACCAGAGGCA CTTACGGCTATGGAAACGCCTACTGGCCGCCCACCGACGACGACAACGACGGCGCCGAAAAAGGTTTCACCGGCACTTCCATGTTGGAAAGGAACGACAA ACCGTGGAAACCTCTCAGCCGTAAGATGCAGGTCGATGCATCGATCCTCAGCCCTTACCGTCTGTTAATCGCCCTCCGATTCGTCATCCTTGTATTCTTC CTGCAATGGAGGGTTTCCCATCCGAATAAAGATGCTGTTTGGCTGTGGGCGATGTCAATCGTTTGTGAGCTCTGGTTTGCCTTCTCATGGATTCTCGACC AAATCCCTAAACTGTACCCGGTCAACCGGTTGACCGACCTCGAGGTGTTGAAGGAGAAGTTCGAGATGCCGTCTCCGTCTAATCCCACCGGCCGATCGGA TCTTCCCGGAGTCGACATGTTCGTTTCCACTGCCGATCCTGAAAAGGAGCCGCCGCTCATCACCGCCAACACTATTCTCTCGATTTTGGCGGTGGATTAC CCCGTCGATAAGCTGGCTTGTTACTTGTCCGACGACGGAGGCGCACTATTGACGTTCGAAGCGATGGCGGAGGCCGCCAGCTTCGCCGATCTGTGGGTGC CGTTCTGCCGAAAGCACAATATCGAACCGAGGAACCCTGACAGTTACTTCAGCTTGAAAGTTGAGCCGACGAAGAACAAGAGCCGGCTTGACTTTGTCAA GGACAGGAGGAGAATGAAGAGGGAGTACGACGAGTTTAAAGTCCGAATCAACAGCTTATCGGACTCAATACGACGGAGGTCCGACGCGTTTAACGCCAGG GAGGAGATGAAGATGCTTAAGCATATGAGGGAGAGTGGCGCAGGGGATCCGACGGAGCCTCTAAAAGTGAAGAAAGCCACGTGGATGGCTGACGGGACCC ACTGGCCCGGGGCGTGGGCCAGCCCATCTCCGGACCATGCCAAGGGGGACCACCCTGGAATTCTGCAGGTGATGCTCAAGCCGCCGAGTGCTGACCCTTT AATGGGGAGCTCCGACGATAAGATTATCGACTTCAGTGAGGTGGACATCCGGCTGCCGATGTTTGTCTACGTGTCACGTGAGAAACGACCTGGCTACGAC CATAACAAAAAGGCTGGCGCTATGAATTGCCTTGTCAGATCTTCGGCGATTCTCTCCAATGGTCCTTTCATTTTGAATCTGGATTGTGATCACTACATTT ACAATTGCAAAGCTGTTAGGGAAGGGATGTGCTTTATGATGGATCGAGGCGGGGAGAGCATTTGCTTCATTCAGTTCCCTCAAAGGTTCGAAGGAATCGA CCCTTCTGATCGATATGCCAATAAGAATACTGTCTTTTTCGACGGAAATATGCGTGCTCTCGATGGCTTACAAGGACCGGTGTATGTTGGGACCGGGTGT ATGTTCCGGCGGTTTGCTCTTTACGGGTTTGACCCACCGAATCCTGACAAGAATCGGAATCCCAAGGATGATTTGTCTGCTGCTTCTCCTGCTGAGATGC ATCCCTTAACTAACGCGGACTTTGATCCTGATCTCGACTTAAATTTGCTTCCTAGAAGGTTTGGAAATTCGACAATGTTGGCAGAAACCATACCGATCGC AGAGTATCAAGCTCGTCCCTTGGCTGACCATCCTGTTGTCAAGTACGGACGCGCTCCTGGGGTTCTTAGGGTGTCTCGAGAACCCCTTGATGCCGCCACT GTCGCTGAGGCCGTCTCTGTAATCTCTTGCTGGTACGAGGATAAAACAGAATGGGGAGATCGAGTGGGGTGGATCTACGGCTCTGTAACAGAAGATGTGG TGACAGGGTACCGAATGCACAATCGCGGTTGGCATTCGGTATACTGCGTCACCAAGCGCGATGCTTTCAGAGGAGGAGCGCCGATCAACTTGACGGATCG ACTTCACCAAGTGCTGAGGTGGGCCACCGGCTCCGTCGAGATCTTTTTCTCGAGAAACAACGCATTTCTAGCTTCGAGGAAACTCATGTTCCTTCAACGG CTCTTCTATCTCAATGTCGGCATCTACCCGTTCACATCCATCTTCCTCATCGTATACTGCTTCCTTCCCGCACTCTCCCTCTTCTCCGGCCAGTTCATCG TGCAGAACGTAAGCATCACGTTCTTGGTCTACCTCCTCATCATGACCTGTTGCCTCGTCGGTCTGGCGATCTTGGAAGTGAAGTGGTCTGGCGTTGCCCT AGAGGAGTGGTGGAGGAACGAGCAATTCTGGCTTATCTCCGGCACCAGTGCCCACTTAGCCGCCGTCATACAAGGTCTTCTCAAAGTCATGGCGGGGATC GAGATCTCCTTTACCTTGACCTCCAAGGCAGCTGGAGACGACGACGACGATCTCTTTGCAGATCTTCACCTCGTGAAGTGGACTTCCCTCATGATCCCGC CGATTGTGATCGCCCTGACGAACATGATAGCCATGGGATGGGCGTTTGTCAGGACGATATACAGCTCTGTGCCGCAGTGGAGTAAGCTTGTCGGAGGAGG TTTCTTTAGCTTCTGGGTTTTGGCTCACCTGTACCCTTTTGCCAAAGGATTGATGGGGAGGAGAGGGAAGACTCCTACCATCGTCTTTGTTTGGTCGGGT CTTATTGCAATCACCATATCTCTTCTATGGATTGCCATTAGTCCACCCAGAATTGTCAACAATCCAGGCCAACCAGGTGGTACAGGCGCAGGATTCGAGT TCCCTTGA
AA sequence Show only first row Show all	>Lus10026568 pacid=23164405 polypeptide=Lus10026568 locus=Lus10026568.g ID=Lus10026568.BGIv1.0 annot-version=v1.0 MSSLSSQPSKKAMRTPGAQQGGGSGSRNPGQTVKFARRTSSGRYVSLSREDLDMSGELSGDYMNYTVHIPPTPDNQPMETSSVAAKAEEQYVSNSLFTGG FNSVTRAHLMDKVIESHVSHPQMAGARGSSCAMPACDGKVMKDERGNDVTPCECRFKICRDCYLDASKDSGLCPGCKEPYRVDDYDDEIPNFSKGALQLP PPNKGESSNNMSVMKRNQNGEFDHNRWLFETRGTYGYGNAYWPPTDDDNDGAEKGFTGTSMLERNDKPWKPLSRKMQVDASILSPYRLLIALRFVILVFF LQWRVSHPNKDAVWLWAMSIVCELWFAFSWILDQIPKLYPVNRLTDLEVLKEKFEMPSPSNPTGRSDLPGVDMFVSTADPEKEPPLITANTILSILAVDY PVDKLACYLSDDGGALLTFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFSLKVEPTKNKSRLDFVKDRRRMKREYDEFKVRINSLSDSIRRRSDAFNAR EEMKMLKHMRESGAGDPTEPLKVKKATWMADGTHWPGAWASPSPDHAKGDHPGILQVMLKPPSADPLMGSSDDKIIDFSEVDIRLPMFVYVSREKRPGYD HNKKAGAMNCLVRSSAILSNGPFILNLDCDHYIYNCKAVREGMCFMMDRGGESICFIQFPQRFEGIDPSDRYANKNTVFFDGNMRALDGLQGPVYVGTGC MFRRFALYGFDPPNPDKNRNPKDDLSAASPAEMHPLTNADFDPDLDLNLLPRRFGNSTMLAETIPIAEYQARPLADHPVVKYGRAPGVLRVSREPLDAAT VAEAVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWHSVYCVTKRDAFRGGAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASRKLMFLQR LFYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQNVSITFLVYLLIMTCCLVGLAILEVKWSGVALEEWWRNEQFWLISGTSAHLAAVIQGLLKVMAGI EISFTLTSKAAGDDDDDLFADLHLVKWTSLMIPPIVIALTNMIAMGWAFVRTIYSSVPQWSKLVGGGFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSG LIAITISLLWIAISPPRIVNNPGQPGGTGAGFEFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	7.3	0.8573
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10027469 [exp]	13.0	0.8413
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	13.0	0.8086
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Lus10023139 [exp]	13.4	0.8323
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	14.4	0.8534
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	24.5	0.8471
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	29.2	0.8466
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10012404 [exp]	35.4	0.7722
AT4G30010			unknown protein		Lus10025458 [exp]	38.7	0.8205
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	45.1	0.8226

Compare expression of checked genes

Lus10026568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.