Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76510 162 / 2e-48 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT2G17410 161 / 2e-46 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G20910 147 / 6e-43 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013852 [exp] 333 / 3e-114 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10022981 [exp] 234 / 7e-75 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10001618 [exp] 234 / 8e-75 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10016045 [exp] 134 / 1e-37 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208900 [exp] 207 / 5e-65 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 165 / 4e-49 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 164 / 1e-48 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 155 / 5e-46 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026569 pacid=23164332 polypeptide=Lus10026569 locus=Lus10026569.g ID=Lus10026569.BGIv1.0 annot-version=v1.0 ATGCAGGGTTGGCATTCTCAACGTCTTCATGGTAATGGTGAGGTTTGTCGACCAATCATTAAGGATAAGACTCTGAGCTCTATTCCCAAGACTGACAAGC CATTGAAGGCAAATGGTGTACTTAAGCGCAAGAAGCCATCAAGTGCCGAGCGTGGTCTCCATGTTTCTCCCCTGAAAACAACGAGGACACAAGCTGATAC AGTAGTAACTGATGTCGGACCCCCTGCTGAATGGGTGAAGATCAATGTACTAAGAACTAATGATTGCTACGAGGTATATGCTCTAGTTCCAGGACATCTG CGCGAGGAGGTGCATGTTCAGTCTGATCCAGCAGGACGCTTAGTTATATCTGGTCAGCCAGAGCAACTTGAGAACCCATGGGGTGTTATCCCGTTCAAAA AGTTTTCACTTGCAGGTGGTCAGCCTACCTTCCAGGATCGATCCGCACCAGACAACTGCTGTAGTGACCCTGCACGGCCAGTTATTTGTACGGGTTCCCT TTGA
AA sequence Show only first row Show all	>Lus10026569 pacid=23164332 polypeptide=Lus10026569 locus=Lus10026569.g ID=Lus10026569.BGIv1.0 annot-version=v1.0 MQGWHSQRLHGNGEVCRPIIKDKTLSSIPKTDKPLKANGVLKRKKPSSAERGLHVSPLKTTRTQADTVVTDVGPPAEWVKINVLRTNDCYEVYALVPGHL REEVHVQSDPAGRLVISGQPEQLENPWGVIPFKKFSLAGGQPTFQDRSAPDNCCSDPARPVICTGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	0	1
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	1.0	0.9047
AT2G32235			unknown protein		Lus10008093 [exp]	3.0	0.8542
					Lus10041974 [exp]	3.5	0.8470
					Lus10017936 [exp]	4.5	0.8255
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10036719 [exp]	6.8	0.8679
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10006707 [exp]	9.2	0.7726
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	9.2	0.8090
AT3G19920			unknown protein		Lus10010180 [exp]	9.2	0.7751
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	16.2	0.7971
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	16.4	0.7470

Compare expression of checked genes

Lus10026569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.