Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38150 291 / 3e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G03560 136 / 6e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G61400 115 / 3e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 115 / 6e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 115 / 7e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63630 110 / 7e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12300 112 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 110 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 109 / 3e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63230 107 / 3e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013853 [exp] 588 / 0 AT4G38150 304 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10032648 [exp] 103 / 1e-25 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10040633 [exp] 107 / 3e-25 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024962 [exp] 106 / 4e-25 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 105 / 9e-25 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10015397 [exp] 103 / 2e-24 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032789 [exp] 102 / 2e-24 AT1G09820 250 / 4e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012068 [exp] 104 / 4e-24 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 103 / 6e-24 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209500 [exp] 319 / 2e-107 AT4G38150 314 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.010G035700 [exp] 120 / 1e-29 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050180 [exp] 117 / 1e-28 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 115 / 3e-28 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 115 / 5e-28 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 114 / 1e-27 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 112 / 3e-27 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 112 / 4e-27 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 110 / 1e-26 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 110 / 2e-26 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026570 pacid=23164325 polypeptide=Lus10026570 locus=Lus10026570.g ID=Lus10026570.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCATCGTCTCTAGTGAAGGTAAGAGCTTCAATCTCCAGCTCAATTTCTACGCTGTTATGCCGCTGCAGTTCTTCAGCGGCAGGGGAAACTG GTTTTACCAAACAAATCGAAAATGATGAAGCCAGCGGTCGTGATCTTCGTCCTCCTCCAAATCCTATACCTAATAGGCCTCTGAGGCGTGAGAGAACCTT TCAGTCTCGTTCCGTCGGGCCTCAACCGCCGCCGCCGCCGCCTTCGCGGTTCCCTCAAAATCAGAATGCTCAGTTTCAGGCACAGAGCCGGACGAGGCCG ACCAATCAGGAGGATAAAGTCTCCGACGATGCTTTCCTCGACAGATTCAAGCTCCGGCCTAAAAAGGTAGAGGCTGAGATCAAGGATCCCCGTACTACTA CTCCCAACGTTGCAGCTGGCGAATCAGTTTCCCCGAAAGAAGGCGATGATGAACCTCATCGGAGCTCCAAAAAATCCGATCACTCCCGCGTCCAAGCTCC CCCTCCAGACGCGGACGAGATATTCAAGAAGATGAAGGAGACCGGCCTGATACCTAACGCCGTCGCCATGCTGGACGGGCTATGCAAGGACGGCCTGGTA CAGGATGCGATGATGCTCTTCGGTCAGATGAGGGAGAAAGGGACGATGCCGGAGGTTGTTATCTATACAGCGGTGGTGGACGGCTTCTGCAAGGCTCGAA AGCCCGACGACGCCAAGAGGATTTTCAGGAAAATGGTCAGCAATGGGATCAACCCTAACGCGTTCACCTACACGGTGTTGATCCAGGGACTTTACATGTG TGGGAATTTAGAGGACGCAGTTGATTTTACCGGGGAAATGCTGGAGGCCGGACATTCTCCCAATGTTGCCACCTTTGTAGGGTTGGTGGATGGGTTTTGT AAAGAGAAGGGAGTGGAGGAAGCTCAGAGCGTCATCAAGTCTTTGCGGCAGAAGGGTATGTTTCTGAATGATAAGGCTGTGAGGGAGTTTTTGGATAAGA ATGCTCCGTTATCTTCTTCGCTTTGGGAAGCCATCTTTGGGAAGAAACCTACTCAGAAGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10026570 pacid=23164325 polypeptide=Lus10026570 locus=Lus10026570.g ID=Lus10026570.BGIv1.0 annot-version=v1.0 MAASSSLVKVRASISSSISTLLCRCSSSAAGETGFTKQIENDEASGRDLRPPPNPIPNRPLRRERTFQSRSVGPQPPPPPPSRFPQNQNAQFQAQSRTRP TNQEDKVSDDAFLDRFKLRPKKVEAEIKDPRTTTPNVAAGESVSPKEGDDEPHRSSKKSDHSRVQAPPPDADEIFKKMKETGLIPNAVAMLDGLCKDGLV QDAMMLFGQMREKGTMPEVVIYTAVVDGFCKARKPDDAKRIFRKMVSNGINPNAFTYTVLIQGLYMCGNLEDAVDFTGEMLEAGHSPNVATFVGLVDGFC KEKGVEEAQSVIKSLRQKGMFLNDKAVREFLDKNAPLSSSLWEAIFGKKPTQKLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	0	1
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	2.8	0.8212
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	5.7	0.8325
AT1G08410			P-loop containing nucleoside t...		Lus10013359 [exp]	7.9	0.7465
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10019745 [exp]	9.7	0.7867
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	10.2	0.8050
AT5G56310			Pentatricopeptide repeat (PPR)...		Lus10002024 [exp]	15.3	0.7493
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	16.6	0.7762
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	17.4	0.7491
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10029793 [exp]	19.0	0.7413
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	23.4	0.7589

Compare expression of checked genes

Lus10026570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.