Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38160 252 / 6e-83 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G78930 117 / 1e-29 Mitochondrial transcription termination factor family protein (.1) AT4G14605 94 / 1e-21 Mitochondrial transcription termination factor family protein (.1) AT3G18870 89 / 8e-21 Mitochondrial transcription termination factor family protein (.1) AT5G55580 85 / 2e-18 Mitochondrial transcription termination factor family protein (.1) AT2G44020 84 / 4e-18 Mitochondrial transcription termination factor family protein (.1) AT2G21710 83 / 1e-17 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G02990 81 / 3e-17 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT2G36000 76 / 7e-16 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT5G54180 66 / 6e-12 PTAC15 plastid transcriptionally active 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013854 [exp] 397 / 3e-140 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10035714 [exp] 110 / 4e-27 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 99 / 3e-23 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 97 / 1e-22 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 95 / 7e-22 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 94 / 2e-21 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 93 / 4e-21 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 90 / 1e-20 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 90 / 3e-20 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209400 [exp] 320 / 1e-109 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 312 / 5e-105 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 129 / 8e-34 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 94 / 1e-21 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 93 / 2e-21 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 93 / 3e-21 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 87 / 2e-19 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 85 / 3e-19 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 86 / 7e-19 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 77 / 4e-16 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10026571 pacid=23164211 polypeptide=Lus10026571 locus=Lus10026571.g ID=Lus10026571.BGIv1.0 annot-version=v1.0 ATGAAGAAAGAAAACGCTTTCGTTTCTGAGTCTTGCAGGGATATGGAAATGGCGTGCAATCAAAACCCTACCAGCGTGATGTGGTTCTTCAGGGACAGAG GCTTCGACGAGAAAAGCATCAACGACATGTTCACAAAGTGCAAGCGTCTTGAAGGTGCTCACAAGGATAGAGCGTCAGAGAATTGGGATTTCCTGAAAAG CATTGGCATCCAAGAAAGGAAGCTCCCTTCCATAATCTCCAAGCTGGTTAGCTACAGCATTGATACCAAGATGAAAGAGCTTGTTGACTTCCTTGTTGGT TTGGGGCTTACCAGAGATGGGATGATTGGTAGAGTTCTTGTGAAGCACCCTTTCATAATGGGGTACAACATCGAGAAAAGGCTGCGGCCAACCTGCGAGT TCTTAAGATCGGTTGGCCTCTCGGCTTCCGATCTTCAGACTGTTGTTTTGAAGTTCCCCGAGGTTGTGTGTAGAGATGTGGAGAAGACTTTGAAACCGAA TTTTGCTTATCTGAGGGGATGTGGGTTTGGGGATGGACAGTTGGTTGCTTTGGTGACCGGTTACCCTCCCATTCTGATCAAGAGCATCCAGAACTCGTTA GAACCTAGGATGAAGTTCTTGGTTGATGTTATGGGGAGACATCTTGATGAAGTTGTGGAGTACCCTAACTTCTTCCAGTGCGGGTTGAAGAAGACGCTCG AGTCGAGGCACAGATTTTTGAGGCAGAGGAATGTAGAATGTAGCTTGAGCGATATGTTGAGCTGTAATCGTAAGAAGTTCTTCATGAAATATGGGTCCGG TTGA
AA sequence Show only first row Show all	>Lus10026571 pacid=23164211 polypeptide=Lus10026571 locus=Lus10026571.g ID=Lus10026571.BGIv1.0 annot-version=v1.0 MKKENAFVSESCRDMEMACNQNPTSVMWFFRDRGFDEKSINDMFTKCKRLEGAHKDRASENWDFLKSIGIQERKLPSIISKLVSYSIDTKMKELVDFLVG LGLTRDGMIGRVLVKHPFIMGYNIEKRLRPTCEFLRSVGLSASDLQTVVLKFPEVVCRDVEKTLKPNFAYLRGCGFGDGQLVALVTGYPPILIKSIQNSL EPRMKFLVDVMGRHLDEVVEYPNFFQCGLKKTLESRHRFLRQRNVECSLSDMLSCNRKKFFMKYGSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	3.6	0.9665
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10010636 [exp]	4.5	0.9441
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	4.6	0.9656
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	5.3	0.9662
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	5.6	0.9330
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	6.8	0.9262
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	6.9	0.9634
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	7.5	0.9555
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	9.2	0.9592
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	9.9	0.9526

Compare expression of checked genes

Lus10026571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.