Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 1268 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 1033 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G55910 355 / 7e-113 D6PK D6 protein kinase (.1) AT5G40030 347 / 1e-109 Protein kinase superfamily protein (.1) AT3G12690 345 / 5e-108 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 342 / 9e-108 RSH3 root hair specific 3 (.1) AT3G27580 332 / 7e-103 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT2G34650 308 / 5e-96 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT3G14370 292 / 3e-89 WAG2 Protein kinase superfamily protein (.1) AT1G53700 282 / 1e-85 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001604 [exp] 1383 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 1300 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036144 [exp] 995 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 967 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10013856 [exp] 578 / 0 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10042911 [exp] 352 / 2e-111 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 347 / 5e-109 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10035591 [exp] 324 / 8e-97 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 324 / 1e-96 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 1382 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 1068 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 900 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170550 [exp] 385 / 3e-128 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.010G175900 [exp] 345 / 1e-107 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.017G075400 [exp] 341 / 2e-107 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 345 / 4e-105 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 335 / 3e-104 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 336 / 7e-101 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.014G047500 [exp] 328 / 7e-100 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10026572 pacid=23164348 polypeptide=Lus10026572 locus=Lus10026572.g ID=Lus10026572.BGIv1.0 annot-version=v1.0 ATGGACAAACCTACACCACTGGTACCATCCACCAGTACCAGCAAGAGGTGGATGGCTTTTGAACAGAGTACTAATAACGGCGCCGGCGGGGACTCCGACA TGGTGATTACTGACGGCCCGAGTGTGGCCGAGAGGGCGGCGGCGTGGGGGCTGGTGGTGAGGTCGGTGGACGGCGCCGGGGGAGGGAGCTTCAAGGCGGT GACGGCGAGGACTTCTGCACGGTCTTCGTTAGAGCAGCAGAGGAGGTCGGGGATAACGACGTCGGAGGAATTGGCGGAATCATCGTTTCCGAGAGTGTCG GAGGAACTGAAGGACGCGCTGTCGACGCTGCAGCAGACTTTTGTGGTGTCGGACGCGAGTAAGCCGGACTGCCCCATCATCTACGCTAGCAGTGGCTTCT TCACCATGACTGGTTACTCTACTAAGGAAGTCATCGGCCGGAACTGCCGGTTTCTGCAAGGTCCTGACACAGACGCGAAGGAAGTAGCGAAGATCAGAGA GGCGGTGAAGAGCGGGAAGAGCTTCAGCGGAAGGCTTCTCAACTACAAGAAAGATGGCACTCCTTTCTGGAATCTCCTCACTGTCACTCCTATCAAGGAT GACCTCGGCAACACCATCAAATTCATCGGAATGCAGGTGGAGGTCAGCAAATACACCGAAGGTATTACTGACAAGGCCATGCGCCCCAATGGCTTACCAA AGTCACTCATCCGTTACGATGTTCGCCAGAAGGATAAGGCACTGAATTCCATCAATGAAGTTGTTCAAACAATCAAGCATCCGAAGTCTCATGTTCGGAC AGCGAGCCATGACACTGCCGATGGTCTTGACTTTGTCCTGCCCAAATCCGCTGATCTTACCTCCATGGTTACGCCTGGTAGAGAAACACCTCGCTCTGAC GCTTCTCGCATTGGTAGTCCTCAGGGTTATGCTAAGAAACCCAGGAATTCTCTACGACTTTCCTTCATGGGCCGGCTTAGAGGCGATGCTACAAGTTCTT CGAAGAAGTACGAAGAACCACTTGAACCAGAGGATTTGATGACCAAGGATGTTAGTCGTACCGACAGTTGGGAACACGTTGAAAGAGACAGGGACATGCG CCAAGGATTTGATTTGGCAACTACGCTGGAGCGCATTGAGAAGAATTTTGTGATCACTGATCCTAGGCTTCCAGATAACCCCATTATATTTGCTTCGGAT AGCTTTCTTGAACTAACAGAGTACACACGCGAAGAAATCTTGGGAAGAAATTGTAGGTTTCTTCAAGGACCTGAAACAGACCAGACAACTGTGTCTAAGA TAAGAGATGCTATTAGTGAACAGCGGGAAATCACTGTTCAGTTGATCAACTACACTAAAAGTGGAAAGAAATTCTGGAACTTGTTTCACTTACAACCAAT GCGTGATCAAAAGGGGGAGCTGCAATACTTCATCGGCGTTCAGCTGGATGGAAGTGATCATGTAGAACCTTTACGAAATCGTCTTTCAGAAAACAGTGAG CACACGAATGCGAAGTTGGTCAAAGCTACTGCAGTGAATGTTGATGAAGCTGTTCGAGAACTTCCAGATGCCAATTTGCGACCAGAAGATTTGTGGGCAA TTCATTCACGGACTGTACTTCCACGGCCTCACAAAAGGGACAGTTCTACATGGAGAGCTATTCAGAAGATTACCGCGCATGGTGAAAAGATTGGACTGCA TCATTTCAAGCCGGTTAAACCTTTGGGTTGCGGTGATACTGGCAGTGTTCACCTAGTGGAACTGAAAGAAACAGGGGAACTTTATGCCATGAAGGCAATG GAAAAATCCACGATGATGAGCCGTAACAAGGTTCACCGAGCATGCATTGAGAGAGAAATTATTTCACTTCTAGACCATCCTTTTCTTCCAACGTTGTATA CATCCTTTGAGACTTCAACACATGTATGTCTCATAACAGACTTTTGTCCTGGTGGAGAGCTATTTGCACTACTTGACAAGCAGCCTATGAAGTTATTTAA GGAAGAGTCTGCTAGGTTCTATGCTGCAGAGGTTGTAATTGGCTTGGAGTACCTTCACTGCTTAGGAATTGTTTACCGGGACCTGAAGCCTGAGAATGTA CTACTCGGGAGAGATGGGCATGTTGTTCTGACAGACTTCGATCTATCTTATGTGGCGTCATGTAAACCACAAGTCATAAAACATCCTCCACCAAACAATA GAAGAAGATCCAGGAGTCAGCCACCTCCTGTGTTTGTTGCAGAACCAGCTACGAATTCAAATTCGTTCGTGGGAACTGAAGAATATATTGCCCCTGAAAT CGTAACGGGCACGGGCCATAGTAGTGCCATCGATTGGTGGGCTCTTGGTATTTTGCTGTATGAGATGCTATATGGGCGGACACCTTTCCGAGGGAAGAAC AGGCAGAAGACATTTGCTAATATTCTGAACAAAGATCTTACCTTCCCCAGTAGCATCCCTGTGAGCCTTGGAGCCCGGCAATTGATCAACGGATTGCTGA ACAGAGACCCTGCCAGCCGATTAGGGTCAAAGACTGGCGCGAACGAGATCAAACAGCATCCTTTCTTCAGAGGGATCAATTGGCCTCTAATACGCTGCAT GAGCCCACCGGCATTGGAGGAGCCTTTTGAGCTGATCGGTAGAGATCCAACCTCGAAGGACGTTTCATGGGAAGACGACGGTTTGCTCACGCAAGCTGCG GACGTGGACATATTTTGA
AA sequence Show only first row Show all	>Lus10026572 pacid=23164348 polypeptide=Lus10026572 locus=Lus10026572.g ID=Lus10026572.BGIv1.0 annot-version=v1.0 MDKPTPLVPSTSTSKRWMAFEQSTNNGAGGDSDMVITDGPSVAERAAAWGLVVRSVDGAGGGSFKAVTARTSARSSLEQQRRSGITTSEELAESSFPRVS EELKDALSTLQQTFVVSDASKPDCPIIYASSGFFTMTGYSTKEVIGRNCRFLQGPDTDAKEVAKIREAVKSGKSFSGRLLNYKKDGTPFWNLLTVTPIKD DLGNTIKFIGMQVEVSKYTEGITDKAMRPNGLPKSLIRYDVRQKDKALNSINEVVQTIKHPKSHVRTASHDTADGLDFVLPKSADLTSMVTPGRETPRSD ASRIGSPQGYAKKPRNSLRLSFMGRLRGDATSSSKKYEEPLEPEDLMTKDVSRTDSWEHVERDRDMRQGFDLATTLERIEKNFVITDPRLPDNPIIFASD SFLELTEYTREEILGRNCRFLQGPETDQTTVSKIRDAISEQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENSE HTNAKLVKATAVNVDEAVRELPDANLRPEDLWAIHSRTVLPRPHKRDSSTWRAIQKITAHGEKIGLHHFKPVKPLGCGDTGSVHLVELKETGELYAMKAM EKSTMMSRNKVHRACIEREIISLLDHPFLPTLYTSFETSTHVCLITDFCPGGELFALLDKQPMKLFKEESARFYAAEVVIGLEYLHCLGIVYRDLKPENV LLGRDGHVVLTDFDLSYVASCKPQVIKHPPPNNRRRSRSQPPPVFVAEPATNSNSFVGTEEYIAPEIVTGTGHSSAIDWWALGILLYEMLYGRTPFRGKN RQKTFANILNKDLTFPSSIPVSLGARQLINGLLNRDPASRLGSKTGANEIKQHPFFRGINWPLIRCMSPPALEEPFELIGRDPTSKDVSWEDDGLLTQAA DVDIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10026572 [exp]	0	1
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	2.4	0.8427
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10028580 [exp]	4.0	0.8399
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	5.5	0.8401
AT3G56010			unknown protein		Lus10040939 [exp]	5.8	0.8406
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	8.5	0.8355
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	10.2	0.8334
AT5G61040			unknown protein		Lus10021155 [exp]	15.3	0.8326
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	17.9	0.8228
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	19.4	0.8261
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	20.1	0.7902

Compare expression of checked genes

Lus10026572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.