Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35440 456 / 2e-155 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2) AT1G55620 208 / 2e-61 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013857 [exp] 559 / 0 AT4G35440 300 / 1e-96 chloride channel E (.1.2) Lus10027138 [exp] 209 / 2e-60 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10032888 [exp] 208 / 5e-60 AT1G55620 1052 / 0.0 chloride channel F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209900 [exp] 489 / 3e-168 AT4G35440 730 / 0.0 chloride channel E (.1.2) Potri.001G472700 [exp] 212 / 1e-61 AT1G55620 860 / 0.0 chloride channel F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10026573 pacid=23164376 polypeptide=Lus10026573 locus=Lus10026573.g ID=Lus10026573.BGIv1.0 annot-version=v1.0 ATGTTGTTGGCTGCAAACAACCTACAAGAGGCTGGAATACCAAGAGCTGCATATCCCGTGATAGGTGGCTTGGTTACTGGGTTGATAGCATTGGCATATC CCGAAATCCTGTACTGGGGTTTTGAGAATGTTGATATTTTGCTGGAATCTAGGCCCTTTGTTAAAGGTCTATCAGCTGATCTATTGGTTCAACTGGTGGG AGTCAAGATAGTAGCCACTTCTTTGTGTCGTGCATCGGGATTGGTTGGGGGCTACTATGCTCCTTCTCTCTTTATTGGTGCAGCGACAGGAATGGCATAT GGCAAACTGATTGCGCTTGCAGTTGCTCAGTCGCAGATAACAGAGCAATTTTCCATCTTGGAAGTTGCTTCACCACAAGCTTACGGCCTGGTTGGAATGG CTGCAACACTTGCAGGGGTGTGTCAAGTGCCTCTTACTGCTGTGCTACTACTGTTTGAACTAACGCATGACTATCGAATAGTCCTTCCACTACTCGGAGC CGTAGGGTTATCCTCATGGGTCACTTCAGGACAAATGAGAAGAGATACTAAAGACACCAGAAAACAAGAGGAGCAACAAAATCCTACTCAAACTCAGAAA AACTCAGCATCAACCACAACTGCAAGTCTCCCTGTCCGCAATGGTAATCAACTCAACACGAATGATCTTTGCGAAATCGAAAGTTCTCTCTGCATGGATG ATTCCGTTTCCATGTATAGCAAACCAATTCTTGTTTCTCAAGCCATGAGGACAAGATACGCAACCGTTACCATGAACACCTTACTCAGTGAAGCAGTGAG GCTCATGCTTGAAGAGAAGCAGTCTTGCGCGTTAATTCTTGATCATGATGATACTCTGATCGGTTTACTAACCCTCGAAGACATTGAGAACTTCATCAAA ACTGGGAAAGCAGAAAGCTGGAGATCACAGGTAAATGACGAGTCTTTCCCCCGTTCTGGAGACTTTTCTGTATCGGAGATATGCTCCTGGGGGGCCAAAG CCTGCCAGGTGCCCTGGACTGTAAAACCCAGTATGGACCTCCTTTCAGCGCAGCTTATTATGGATAGGCATAATCTGAATCAAGTACCAGTTGTATCAGA AGGTTTAACAGACAATGAATCAGGTAATTTAGTTGGGGTTTTGGACAGAGAGTGCATAAATATAACCCGCAGATTCTTCACCAATATTTGTAAATGA
AA sequence Show only first row Show all	>Lus10026573 pacid=23164376 polypeptide=Lus10026573 locus=Lus10026573.g ID=Lus10026573.BGIv1.0 annot-version=v1.0 MLLAANNLQEAGIPRAAYPVIGGLVTGLIALAYPEILYWGFENVDILLESRPFVKGLSADLLVQLVGVKIVATSLCRASGLVGGYYAPSLFIGAATGMAY GKLIALAVAQSQITEQFSILEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTHDYRIVLPLLGAVGLSSWVTSGQMRRDTKDTRKQEEQQNPTQTQK NSASTTTASLPVRNGNQLNTNDLCEIESSLCMDDSVSMYSKPILVSQAMRTRYATVTMNTLLSEAVRLMLEEKQSCALILDHDDTLIGLLTLEDIENFIK TGKAESWRSQVNDESFPRSGDFSVSEICSWGAKACQVPWTVKPSMDLLSAQLIMDRHNLNQVPVVSEGLTDNESGNLVGVLDRECINITRRFFTNICK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	0	1
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	1.0	0.9281
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	2.8	0.8617
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	3.0	0.8889
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10021701 [exp]	3.7	0.8968
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	4.6	0.8731
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	6.6	0.8828
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	6.9	0.8440
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	6.9	0.8355
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	9.5	0.8770
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	10.0	0.8528

Compare expression of checked genes

Lus10026573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.