Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35440 161 / 6e-45 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2) AT1G55620 114 / 2e-28 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2) AT5G40890 42 / 0.0005 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013858 [exp] 389 / 1e-137 AT4G35440 171 / 2e-48 chloride channel E (.1.2) Lus10032888 [exp] 105 / 2e-25 AT1G55620 1052 / 0.0 chloride channel F (.1.2) Lus10027138 [exp] 105 / 4e-25 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10040696 [exp] 60 / 5e-10 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 56 / 1e-08 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10012526 [exp] 41 / 0.001 AT3G27170 1264 / 0.0 chloride channel B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209900 [exp] 170 / 4e-48 AT4G35440 730 / 0.0 chloride channel E (.1.2) Potri.001G472700 [exp] 100 / 1e-23 AT1G55620 860 / 0.0 chloride channel F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10026574 pacid=23164217 polypeptide=Lus10026574 locus=Lus10026574.g ID=Lus10026574.BGIv1.0 annot-version=v1.0 ATGGATTTGATGGATTCAAGAAGTCTTACTGCCTCGCCGGGAAGTGATCGTCCTCCGGCAGTCGGACTCCCGATCAGGAGAGAAAGAAAGGTGTTCCGTG GACAGAGGAAGAGCATAAGCAATTATGATGCTGCTCATCGGAAGTGGACTCGGGAGGTCAGAATGCATAACCCGTCGTCATCGCAGCAGCTGCCTCGCCA TTTCAATCCACCTCAGTTTCTCTTCGCTTCTTCTTCAGCAATCCATCGCTTTCCTTGCTTCCCTCTCCATCTTCCCTTCCCACTCCGACACTCCAAAATC AGCATCCGTAGAGCGACACCGACGCTTCCCGGAAGCGGAGACGGTGGCAACAATCGAGTAGAAACAGAAAACGTTGAGCAAGTGCGAAGCTTAGCTGATG ACGAAAACAACAGCAGCAGGGCCGGAACCATCACTATGGATTCTGGAATCGTGCTGTCTTCCTGCCTCGTCGGCCTCCTCACCGGCGTCGCCGTGGTCAT CTTCAACAACGCGGTGCACGAAATACGCGACCTCTTATGGGACGGAATACCGTACCGGGGCGCATCCTGGTTGCGAGAGGAGCCCCTTGATTCCATCTGG ACTCGAGTCATCTTGGTCCCCGCTTCCGGTGGCTTGATAGTCGCCTTGTTGAACCTGCTCCGCTCTTCTCTTCCGGAATCGGACGCTCAGCGAAGTTCAT CCGACGTTCGGAACCGATTCGCCGCTGTTCTCCGGCCTGTCTTGAAAGCGCTATCGGCTTCTTTCACCCTAGGGACCGGGAATTCACTAGGACCTGAAGG CCCTAGCGTCGAAATTGGGGCATCAATCGCCACCTGA
AA sequence Show only first row Show all	>Lus10026574 pacid=23164217 polypeptide=Lus10026574 locus=Lus10026574.g ID=Lus10026574.BGIv1.0 annot-version=v1.0 MDLMDSRSLTASPGSDRPPAVGLPIRRERKVFRGQRKSISNYDAAHRKWTREVRMHNPSSSQQLPRHFNPPQFLFASSSAIHRFPCFPLHLPFPLRHSKI SIRRATPTLPGSGDGGNNRVETENVEQVRSLADDENNSSRAGTITMDSGIVLSSCLVGLLTGVAVVIFNNAVHEIRDLLWDGIPYRGASWLREEPLDSIW TRVILVPASGGLIVALLNLLRSSLPESDAQRSSSDVRNRFAAVLRPVLKALSASFTLGTGNSLGPEGPSVEIGASIAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	0	1
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	2.2	0.8427
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	5.1	0.8282
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	8.7	0.8037
AT5G13950			unknown protein		Lus10031980 [exp]	9.3	0.8116
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	9.6	0.8093
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	12.7	0.7537
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	15.7	0.7959
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	15.7	0.7756
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	25.5	0.7680
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	25.7	0.7645

Compare expression of checked genes

Lus10026574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.