Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17390 385 / 8e-134 AKR2B ankyrin repeat-containing 2B (.1) AT4G35450 382 / 6e-133 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G47450 67 / 4e-12 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT2G03430 59 / 6e-10 Ankyrin repeat family protein (.1) AT2G25600 61 / 7e-10 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 59 / 3e-09 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT3G23280 58 / 4e-09 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT5G12320 55 / 5e-09 ankyrin repeat family protein (.1) AT5G53470 56 / 9e-09 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 55 / 2e-08 ACBP2 acyl-CoA binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013859 [exp] 585 / 0 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 501 / 4e-173 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10002621 [exp] 67 / 3e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10020272 [exp] 67 / 4e-12 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10023973 [exp] 62 / 3e-10 AT2G47450 391 / 2e-135 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Lus10009696 [exp] 59 / 3e-10 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10023911 [exp] 59 / 4e-10 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10021508 [exp] 59 / 5e-10 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10036033 [exp] 58 / 5e-10 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210100 [exp] 498 / 4e-178 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 498 / 4e-178 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.009G140500 [exp] 67 / 5e-12 AT2G47450 423 / 7e-148 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.010G185200 [exp] 65 / 2e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.006G249900 [exp] 59 / 2e-09 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.008G167600 [exp] 59 / 2e-09 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.001G276100 [exp] 56 / 2e-09 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.013G062000 [exp] 58 / 4e-09 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.005G075100 [exp] 58 / 4e-09 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.009G070700 [exp] 54 / 7e-09 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10026575 pacid=23164352 polypeptide=Lus10026575 locus=Lus10026575.g ID=Lus10026575.BGIv1.0 annot-version=v1.0 ATGGCTTCCAACAAGGATCTCCCTCCGTCTGAAAGCCAAAGCACAAAACCTGAAGCATCTGCAGCAGCACCAGAGACAGGGCCAGCAGCCGCTTCTGCTG CACCTGAAGCACCTTTTGCTGCAAATCCTTTTGATTTCTCAGCAATGTCTGGTCTGCTTAATGATCCAAGCATTAAAGAACTTGCTGACCAGATAGCGAA AGATCCTTCGTTTAACCAGATGGCAGAACAGCTGCAGAAAACATTTCAAGGAGGTGCAAATGTTGATGAAGGTATGCCGCAGTTTGATACACAGCAGTAT TATTCCACCATGCAGCAGGTTATGCAGAACCCCCAATTTATGGACATGGCTGAACGGCTTGGAAGTGCATTAATGCAGGATCCGTCCATGTCCCAAATGC TTGAACAGATGTCAAGCCCTGTGCAAAAAGATCAAATGGGGGAAAGGATGGCCCGTCTAAAAGAAGACCCTTCTTTGAAGCCTATCTTGGACGAGATAGA GAGTGGGGGTCCAGCTGCCATGATGAGATATTGGAATGACAAGGATGTTCTGAAGAAGTTGGGTGAAGCCATGGGTCTTGCAGTTCCTGGAGAAGCAGCC AGCTCAATTGAGAACTCTGGACAAGAGGAAGCTGAAGAAGATGGAAATGACGATGAATCTGTTGTTCATAACTGTGCCAGTGTTGGGGATGTTGAGGGTC TAAAAGCTGCACTGGCCGCTGGTGCCGAAAAGGACGAAGAGGACTCCGAGGGAAGAACTGCATTGCATTTTGCATGTGGATACGGAGAGGACAAGTGTGC TCAAGTTCTCCTTGAAGCAGGAGCACAGGTTGATGCGCTGGACAAAAATAAGAACACTGCACTCCATTATGCAGCTGGGTACGGGAGAAAAGAGTGTGTA GCCCTTCTACTCGAGAACGGCGCTGCAGTGACTTTGCAAAACATGGACGGGAAGACTCCCATAGATGTTGCAAAGCTGAACAACCAGAACGAAGTTGTCA AGTTGCTGGAGAAGGATGCCTTCCTGTGA
AA sequence Show only first row Show all	>Lus10026575 pacid=23164352 polypeptide=Lus10026575 locus=Lus10026575.g ID=Lus10026575.BGIv1.0 annot-version=v1.0 MASNKDLPPSESQSTKPEASAAAPETGPAAASAAPEAPFAANPFDFSAMSGLLNDPSIKELADQIAKDPSFNQMAEQLQKTFQGGANVDEGMPQFDTQQY YSTMQQVMQNPQFMDMAERLGSALMQDPSMSQMLEQMSSPVQKDQMGERMARLKEDPSLKPILDEIESGGPAAMMRYWNDKDVLKKLGEAMGLAVPGEAA SSIENSGQEEAEEDGNDDESVVHNCASVGDVEGLKAALAAGAEKDEEDSEGRTALHFACGYGEDKCAQVLLEAGAQVDALDKNKNTALHYAAGYGRKECV ALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVVKLLEKDAFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	0	1
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	1.0	0.8981
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	2.8	0.8689
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	4.2	0.8187
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	5.2	0.7838
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	8.1	0.7726
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	9.6	0.8185
AT5G50460			secE/sec61-gamma protein trans...		Lus10041552 [exp]	9.7	0.7978
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	12.2	0.7803
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	14.6	0.6933
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	14.7	0.7365

Compare expression of checked genes

Lus10026575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.