Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 167 / 2e-51 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 154 / 3e-46 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013860 [exp] 286 / 2e-98 AT2G15220 148 / 4e-45 Plant basic secretory protein (BSP) family protein (.1) Lus10013861 [exp] 251 / 1e-83 AT2G15220 209 / 3e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026577 [exp] 244 / 7e-81 AT2G15220 202 / 4e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10026578 [exp] 243 / 3e-80 AT2G15220 209 / 7e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10013862 [exp] 215 / 5e-70 AT2G15220 154 / 7e-47 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 181 / 2e-56 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 179 / 1e-55 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 176 / 2e-54 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 175 / 1e-53 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 189 / 1e-59 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 180 / 3e-56 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 177 / 4e-55 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 174 / 4e-54 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 155 / 3e-46 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026576 pacid=23164297 polypeptide=Lus10026576 locus=Lus10026576.g ID=Lus10026576.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCCTCCGCTTAACCGCCGCGTTTCTCCTTTCTCTGCCGCTACTAGCAGCAGCAGAAACGGCAGAGACGGGCAGCATAGGCACAAACGGAT ACCCACAGCCAAAACCAAAAGTCCATTATTGGAACAAGAAGATTGAGTACGTAGTTACCAACAAGGCCGGGAATTCCGCGGCCGGAGGAATCCGGTTCAA CAAGGAGCTGGGTGAACCGTACGCCAAACGGACCATGATGATGGCCACCGCCTTATCCTGGCGCGTGTTTGACCAGTTAGACTACTACCCCCCTGCATCC CCCAGGAAACCAGTGCGCAAGATTGAGCTGGTACTCGTACCGTTCTCGTCGCTTTACCATAACACTAGTACTAGTACTGTTCGGTACGTTGCGTACGTGC TTAACGGCTCCGTCATTCAAATGGACTCCGATTACTTGGGAACCTACAAGGGCGACCTCAAGCGGGTATTCAGTGGGTTGGTGTACAAAGAAGTGGCGGC CATCCTGCAATGGAATGGTAACGGGGAGGCTCCCGTAGGAGTGACGAGTGGGATATCAGATTACGTAAGGATGAAGGCAGGATTCGGCGGCAGCTACGGT GGGGTGGCTGCGGGACAAGGTGCACGTTGGGACAGTGGGTACGATGTTACGGCAAGGTTTCTGGAACACTGTAACAAACTCAAGAGAGGGTTCATTGCGG AGCTTAACGCCAAAATGAGGAATGGTTACACTGTTGGTTACTTTAAGGATATCCTCGGCAAAACTGTGGATCAGCTCTGGTCAGAATACAAAGCCCTGTA CCGTAAGGGCCATTATTAG
AA sequence Show only first row Show all	>Lus10026576 pacid=23164297 polypeptide=Lus10026576 locus=Lus10026576.g ID=Lus10026576.BGIv1.0 annot-version=v1.0 MAALLRLTAAFLLSLPLLAAAETAETGSIGTNGYPQPKPKVHYWNKKIEYVVTNKAGNSAAGGIRFNKELGEPYAKRTMMMATALSWRVFDQLDYYPPAS PRKPVRKIELVLVPFSSLYHNTSTSTVRYVAYVLNGSVIQMDSDYLGTYKGDLKRVFSGLVYKEVAAILQWNGNGEAPVGVTSGISDYVRMKAGFGGSYG GVAAGQGARWDSGYDVTARFLEHCNKLKRGFIAELNAKMRNGYTVGYFKDILGKTVDQLWSEYKALYRKGHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	0	1
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10016377 [exp]	1.0	0.9598
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10010243 [exp]	7.4	0.8271
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	11.0	0.8703
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	13.7	0.8606
AT2G28830		AtPUB12	PLANT U-BOX 12 (.1)		Lus10023667 [exp]	14.1	0.7751
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10021849 [exp]	14.4	0.7007
					Lus10025477 [exp]	16.2	0.8548
AT4G08630			unknown protein		Lus10004138 [exp]	19.6	0.8163
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	23.2	0.8118
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	24.8	0.8102

Compare expression of checked genes

Lus10026576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.