Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 225 / 2e-74 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 58 / 6e-11 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013863 [exp] 447 / 1e-161 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 224 / 8e-74 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 206 / 9e-67 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019799 [exp] 206 / 2e-66 AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 204 / 7e-66 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 202 / 2e-65 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10014111 [exp] 199 / 8e-64 AT2G15220 202 / 3e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 194 / 5e-62 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10026582 [exp] 192 / 7e-61 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 241 / 1e-80 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 232 / 4e-77 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 231 / 1e-76 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 221 / 9e-73 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 202 / 4e-65 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 53 / 4e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026579 pacid=23164344 polypeptide=Lus10026579 locus=Lus10026579.g ID=Lus10026579.BGIv1.0 annot-version=v1.0 ATGTCTTCACGCATTCTCCTCCTCCTCCTAGTCCTCGCATCGGCGGCTTTCTTCCACGGCTGCCGATGCGACAGCGACATCGACTACGTAGTAGTCAACA ACTCCCCCGACGCACCGGGGGGAGGCAGGTTCATGGACGAGATCGGAGTTGACTACGCAAGGTCGAAAATGTCATCAGCCACGGACTTCATCTTCGACAT CTTCCAACAACGCAACAACACGTCGGAGAGAAGAGGGTACAAACAAGTGAAGCTATTCATCAACAAGTTCAACGCCGCCCAGGTGGCCTACACGGGCGAG AACGAAGTCTACTTCAGCGCGGACTTCATTGGGAACTACGCGGGCGGGGACCTGAAGAAGGAGTTCACCGGGGTGCTGTACAGGGAGATGGCGCACGTGT GGCAGTGGAACGGCGGCGGGAAGGCGCCGGCTGGAGTAGTGGAAGGGATCGCAGCTTACGTCAGGGTGAAGGCTGACCTGGCGCCTGATTATTGGGTGAA GCCTGGTGGTGGGGACAGGTGGGACCAAGGGTACGATGTTGCCGGGAGGTTTGTGGAGTACTGCGAGGGAGTTAGAAAAGGGTTTGTGGCGGAGATGAAT AGGAAGATGAAGGATGGCTATAGTGAAGGGTATTTTGGTCAGGTGATGGGTGGGAAGAGTGTTGGGCAGGTTTGGAGTGAGTATAAGAAGAAGTATACCA AAGTTCACAGGGGAAGAAAGTACTGA
AA sequence Show only first row Show all	>Lus10026579 pacid=23164344 polypeptide=Lus10026579 locus=Lus10026579.g ID=Lus10026579.BGIv1.0 annot-version=v1.0 MSSRILLLLLVLASAAFFHGCRCDSDIDYVVVNNSPDAPGGGRFMDEIGVDYARSKMSSATDFIFDIFQQRNNTSERRGYKQVKLFINKFNAAQVAYTGE NEVYFSADFIGNYAGGDLKKEFTGVLYREMAHVWQWNGGGKAPAGVVEGIAAYVRVKADLAPDYWVKPGGGDRWDQGYDVAGRFVEYCEGVRKGFVAEMN RKMKDGYSEGYFGQVMGGKSVGQVWSEYKKKYTKVHRGRKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	2.2	1.0000
					Lus10011962 [exp]	3.2	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	3.9	1.0000
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	4.5	0.9937
					Lus10022805 [exp]	4.5	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	5.0	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	6.0	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	6.5	1.0000
					Lus10030558 [exp]	6.9	1.0000
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	7.3	1.0000

Compare expression of checked genes

Lus10026579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.