Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 117 / 4e-33 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 115 / 2e-32 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 66 / 1e-14 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013863 [exp] 171 / 4e-54 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 165 / 1e-51 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 117 / 4e-33 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10014111 [exp] 112 / 4e-31 AT2G15220 202 / 3e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10019799 [exp] 111 / 1e-30 AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 109 / 4e-30 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 107 / 4e-29 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10026578 [exp] 105 / 2e-28 AT2G15220 209 / 7e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026582 [exp] 103 / 2e-27 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 124 / 4e-36 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 122 / 4e-35 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 120 / 1e-34 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 118 / 2e-33 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 114 / 3e-32 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026580 pacid=23164242 polypeptide=Lus10026580 locus=Lus10026580.g ID=Lus10026580.BGIv1.0 annot-version=v1.0 ATGTCTCCCAAATTCCAGTTCCTCGTCATCCTAATCATGGCCACGTTAGCCACCGCGTCATCCGTAGACTTCCAGGTCATCAACAACTCCCCAACCACAA AAGGAGGGGCCCGCTTCACATCCGAAATCGGAGCCAACTACACGAGGGACAAAATGTCAGAGTCCTCGGAGTTCATATGGCGGGAGATCTTCCACCAGCG CACCCCTTCCGACCGGCGGAACTACCAACAAGTCAAGCTGTTCGTCAACACGTTCAACGCCACCAAAGTAGCCTACACGGGCGGCGGCAACGAGATCTAC TTCAGCGCAGGGTACCTGGAGAAGTACAGCGGCGGCGCGTTGAGGCAGGAGTTCACGGGGATAATGTACAGGGAGATGGCGCGCGTGTGGCAGTGGACGG GTGGCGGGTCGGGGCAGGCTAACGTCGGGTTGTTCGACGGGATCGCCAACTACGTGAGGATGAAGGCGGACCTTGTTGCGGAGAGCGGCTGA
AA sequence Show only first row Show all	>Lus10026580 pacid=23164242 polypeptide=Lus10026580 locus=Lus10026580.g ID=Lus10026580.BGIv1.0 annot-version=v1.0 MSPKFQFLVILIMATLATASSVDFQVINNSPTTKGGARFTSEIGANYTRDKMSESSEFIWREIFHQRTPSDRRNYQQVKLFVNTFNATKVAYTGGGNEIY FSAGYLEKYSGGALRQEFTGIMYREMARVWQWTGGGSGQANVGLFDGIANYVRMKADLVAESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026580 [exp]	0	1
AT4G27610			unknown protein		Lus10043458 [exp]	5.3	0.8765
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	6.4	0.8915
					Lus10008379 [exp]	7.0	0.8720
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	10.8	0.8600
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	14.8	0.8790
AT3G61920			unknown protein		Lus10030204 [exp]	18.7	0.8396
					Lus10025868 [exp]	19.2	0.8780
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	21.4	0.8417
					Lus10038232 [exp]	24.4	0.8757
AT2G36650			unknown protein		Lus10023883 [exp]	25.3	0.8756

Compare expression of checked genes

Lus10026580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.