Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48840 836 / 0 Plant protein of unknown function (DUF639) (.1) AT3G18350 835 / 0 Plant protein of unknown function (DUF639) (.1) AT5G23390 470 / 3e-156 Plant protein of unknown function (DUF639) (.1) AT2G21720 247 / 2e-71 Plant protein of unknown function (DUF639) (.1) AT1G71240 207 / 1e-56 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013865 [exp] 1301 / 0 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 1046 / 0 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 461 / 2e-152 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 279 / 2e-83 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 275 / 4e-82 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 207 / 7e-57 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 179 / 2e-46 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046500 [exp] 996 / 0 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 984 / 0 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 494 / 2e-165 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 281 / 4e-84 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 226 / 2e-63 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10026581 pacid=23164328 polypeptide=Lus10026581 locus=Lus10026581.g ID=Lus10026581.BGIv1.0 annot-version=v1.0 ATGGCTACAACAAGCAAGACTAGAAACATGCTTGAGGGTTTGGTAAGAGAAGGATCCTTTAAATGGATCCTTGGGAAGAAGACTCGTTTTGATGAAGAAT TCGAGGAAATGGGAAGGTCACCTTCTGCTAAACAAAACTGGATTACAGAGCTATCTCCTCTTGCTAATCTGGTTGTCTCTAGATCTTCGAAAATCCTTGG CACATCTCCAACCAGCCTCCAAGAAAGTTTCAACACGGAAGCTTCTGACTCCATAAAGCACCCATCTCACTATGCCAGGAACTTCTTGGAATACTGTTGT TTTATGACATTGGCTGTTTTCATTCAGAAAACAGGTCATCTGGGGGATAAGAAGTTCCGACGATTGGCTTATGATATGATGTTAGCTTGGGAGAGTCCAG CTGCTACCAGTGAACCCTTAGCTAATGTAGATGAAGTCCTTACAGTTGGTCGTGAGGCCTTTTCTCGGATAGCCCCAGCTGTTCCAATCATTGCAAATGT TGTTATTAGTGAAAATCTGTTTCAAGTGCTTACTGTGTCAACTGATGGGCGGCTTCAGTTTTCTATCTTTGACAAATACCTAAGTGGATTAGAAAGATCA GTCAAAAAGATGATATCCCAATCTGATTCATCACTTCTTTCTGAAGCCCGGTCAGCAAAAAGAGAGAGAATTTTAGAAGTGGAAGGGACTGTCACCACCC AACCCGTTCTTGAACATGTTGGAGTATCTACTTGGCCAGGTCGCTTAGTTCTTACAGATCATGCCTTGTACTTTGAAGCACTTCGTGTTGTTTCCTATGA CAAACCAAAAGTATATGATCTGTCAGAAGACATGAAGCAAGTTGTTAAACCTGAATTAACTGGACCGTGGGGAACACGGCTTTTTGACAAAGCAGTTTTT TACAGCTCTGTTTCTTTATCGGAACCTGCTATTATAGAGTTCCCTGAGCTAAAAGGACATACTCGTCGGGATTATTGGCTTGCAATCATGCGTGAAATTT TGCTGGTTCACAAATTCATAAGAAAGTTTCAAATCTCAGGAGTAGCACGGGATGAGGCTCTTTCAAAAGCTGTACTTGGAATCTTGCGATTACAAGCCAT TCAAGAACTTAGTTCTACAGATATACGGCATGAAGATATTCTCCTGTTTAATCTGTGTGAAGAACTCCCTGGCGGAGATTTGATTCTAAAAACTCTGGCA ACTATGTCTTCTGTGAAGGAAGCAGAGTCAACTAACCATTACAAGAATGGAGGTGGAATGTATTCAGCCTCATCAATGGCCATGGTTACTGGTTTAGGAT TTGTATTCGGAACAAAGTCCAGTGATCCTAATGTAACTGCACTTGCAGTTGGTGAGGTGGCTGTTGGTGAAATGAGTTCTTTGGAAAGAGCAGTCAGAGA ATCGAAGGACAGCTACAAAAAAGTGGTTGTAGCACAAGCAACTGTGGATGGAGTTAAAGTTGACGGCCTTGACACTAATCTAGCCGTGATGAAGGTGAGG CCACTTCTATTATCTGGAATCGGTACTATGTTTGCTCTCGTCCTAAGATCACAAAATGCCTACCTATTTATGCTAGATCATGATCACATTGAGTCTAGGG ACTTGCTGCTCCCTGTAATGGAGGTTGGGAAGTGGCTTCTTTCATTGCTGTATTGGGATGACTCGAAGAACTCCCTGGTTTTCTGCGTGGTTGTGTCTTT TCTTATCTGGATGGGATGGTTGAGTTATGTTTTTGCGCTGATGCTCGCTTTGCTGGGGGTGCTGATGCTGATTACCCGGTTTATGAACCAAGGCCGGGCT GTCGATGAACTAAAGGTAATAACACCACCACCAATGAACACAGTGGAACAGCTTCTGGCTGTTCAGAACGCGATTTCGCAGGTGGAACAGCTAATCCAGG ATGGGAACATTGGCCTGCTCAAGGTCCGAGCCTTGCTACTGGCCGTCTTCCCCCAAGCAAGCGATAAATTTGCGATGGCACTTTTGGGGTTCGGGGTAGT GTTGGCCATTTTACCAATGAAGTATGTACTTCTGCTGAGCTTCCTGGATGCATCGACGAGGTACTCACCGGCAAGAAGAGATAGCACGGAGAGATTTGAA AGGCGTGTGAGAGAGTGGTGGTTCAGCATACCTGCAGCGCCGGTGGTACTTGAAAGAGAACAAGATGAGAAAAAAAAGAAGTAG
AA sequence Show only first row Show all	>Lus10026581 pacid=23164328 polypeptide=Lus10026581 locus=Lus10026581.g ID=Lus10026581.BGIv1.0 annot-version=v1.0 MATTSKTRNMLEGLVREGSFKWILGKKTRFDEEFEEMGRSPSAKQNWITELSPLANLVVSRSSKILGTSPTSLQESFNTEASDSIKHPSHYARNFLEYCC FMTLAVFIQKTGHLGDKKFRRLAYDMMLAWESPAATSEPLANVDEVLTVGREAFSRIAPAVPIIANVVISENLFQVLTVSTDGRLQFSIFDKYLSGLERS VKKMISQSDSSLLSEARSAKRERILEVEGTVTTQPVLEHVGVSTWPGRLVLTDHALYFEALRVVSYDKPKVYDLSEDMKQVVKPELTGPWGTRLFDKAVF YSSVSLSEPAIIEFPELKGHTRRDYWLAIMREILLVHKFIRKFQISGVARDEALSKAVLGILRLQAIQELSSTDIRHEDILLFNLCEELPGGDLILKTLA TMSSVKEAESTNHYKNGGGMYSASSMAMVTGLGFVFGTKSSDPNVTALAVGEVAVGEMSSLERAVRESKDSYKKVVVAQATVDGVKVDGLDTNLAVMKVR PLLLSGIGTMFALVLRSQNAYLFMLDHDHIESRDLLLPVMEVGKWLLSLLYWDDSKNSLVFCVVVSFLIWMGWLSYVFALMLALLGVLMLITRFMNQGRA VDELKVITPPPMNTVEQLLAVQNAISQVEQLIQDGNIGLLKVRALLLAVFPQASDKFAMALLGFGVVLAILPMKYVLLLSFLDASTRYSPARRDSTERFE RRVREWWFSIPAAPVVLEREQDEKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48840			Plant protein of unknown funct...		Lus10026581 [exp]	0	1
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022472 [exp]	5.1	0.8037
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	6.5	0.8385
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	7.4	0.8263
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	10.8	0.8328
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	14.3	0.8278
					Lus10019050 [exp]	23.1	0.8224
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	23.4	0.8114
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10009257 [exp]	24.5	0.7077
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	30.9	0.8021
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	36.4	0.7802

Compare expression of checked genes

Lus10026581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.