Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 193 / 8e-62 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 159 / 3e-48 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013866 [exp] 407 / 8e-146 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 201 / 1e-64 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 190 / 3e-60 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 187 / 4e-59 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 184 / 8e-58 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026578 [exp] 184 / 1e-57 AT2G15220 209 / 7e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 181 / 2e-56 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 180 / 3e-56 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026577 [exp] 180 / 4e-56 AT2G15220 202 / 4e-65 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 213 / 2e-69 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 210 / 3e-68 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 209 / 6e-68 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 207 / 5e-67 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 189 / 7e-60 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 54 / 2e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026582 pacid=23164333 polypeptide=Lus10026582 locus=Lus10026582.g ID=Lus10026582.BGIv1.0 annot-version=v1.0 ATGCATCACAGCCTAGCTGCCAGAATGTCCACCACTACCGGCGGCCACCTCTCAACCCTCCTCCTCCCCTTCCTCTTTCTCTCCGCCGCCTTTGCGGCGG AAGTAAACTACACAGTGATAAACAACGCAGCCAACACCAATGGAGGAAGGCGATTCGATCACCGAATCGGAACAAACTACACCCTCCAAGCCATGTCCGC CGCCTCCTACTTCATCTGGGACCTCTTCGACCAAACAAACAACAACACCAACATCACTCAACAACGTCGGGGCTACCAAAACGTGACCCTCTACATCGAC CCAATGGACGGCAAGGAAGGCGTGTCGGCCTACGCGAAAGGCAACTCCGTCCACGTCAGCGCCAGCTACATCGGCAACTACACGGGCAACGTGAAAAAGG AGTTCACTGGCGTGCTGTACCACGTGCTGGCGTACACGTGGATGTGGGATGGCGACGGCACGGCCCCACAAGGGCTGAAGTCCGGGATGGCCGAGTTCGT TAGGCTGAAGGCTCATTACGCTCCCCGGATGGTCGGGATAGGTCCCAGGAGGACGGATAATTGGGACGAAGGGTATGGAGTTACGGCCATGTTTTTGGAC TACTGTAACAACTTGAAAGACGGGGTGTTTGTGGCGGAGTTGAACGGGAAGATGAAGGATGGGTATAGCCGAGGGTATTTTAGGGAGTTGCTTGGGAAAT CTGTTGATGTTTTGTGGCAGGATTACAAGTCTAAGTATCTCTTGGCTTGA
AA sequence Show only first row Show all	>Lus10026582 pacid=23164333 polypeptide=Lus10026582 locus=Lus10026582.g ID=Lus10026582.BGIv1.0 annot-version=v1.0 MHHSLAARMSTTTGGHLSTLLLPFLFLSAAFAAEVNYTVINNAANTNGGRRFDHRIGTNYTLQAMSAASYFIWDLFDQTNNNTNITQQRRGYQNVTLYID PMDGKEGVSAYAKGNSVHVSASYIGNYTGNVKKEFTGVLYHVLAYTWMWDGDGTAPQGLKSGMAEFVRLKAHYAPRMVGIGPRRTDNWDEGYGVTAMFLD YCNNLKDGVFVAELNGKMKDGYSRGYFRELLGKSVDVLWQDYKSKYLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026582 [exp]	0	1
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10025976 [exp]	2.8	0.6885
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	5.5	0.6458
					Lus10010697 [exp]	18.1	0.5854
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10035834 [exp]	18.4	0.5246
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	19.4	0.5854
AT5G20610			unknown protein		Lus10025003 [exp]	20.6	0.5854
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	21.4	0.5650
					Lus10008327 [exp]	21.7	0.5854
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	22.7	0.5854
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	25.4	0.5662

Compare expression of checked genes

Lus10026582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.