Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 192 / 3e-61 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013868 [exp] 454 / 2e-164 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 356 / 9e-126 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 350 / 3e-123 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 317 / 5e-110 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 313 / 8e-109 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 311 / 6e-108 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 309 / 5e-107 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 305 / 9e-106 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001608 [exp] 273 / 2e-93 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299600 [exp] 230 / 2e-76 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 228 / 2e-75 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 216 / 8e-71 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 212 / 3e-69 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 194 / 5e-62 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 64 / 6e-12 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026585 pacid=23164388 polypeptide=Lus10026585 locus=Lus10026585.g ID=Lus10026585.BGIv1.0 annot-version=v1.0 ATGATGTCCAACCAGGCATTTACATTACTTTTAATCTCTCTGTTGACCGCCGTGGTCCGCAGCCAAGCCTTCAAATCCGGAAGCCCAGTACTGTACACGG TCACCAACACGGCCAACCAAACAGCCGGCGGGGCCAGATTCGACAAACAGATTGGGGCCCACAGCGCCAAGCAGACCATGTACGCCGCCACCCGCTTCGT CTGGATTCTCTTCAACCAGACCGACGACCCGGCCCAACGGAAGAACATTTCCCAGATCGACCTCTTCATCGACGACAATATCAGCGGCCAAAACGGCACC GTTGTCGCGGCGCGTACAACCAACGCGTCCATCCACCTCAGCGCCGATTATATCGGGAGATATGCCGCCAACCTGCGGAGGCAGTTCAACGGGATAATGT ACGAGGAGGTTGCCGGGATCTGGCAGTGGGACGCGCGTGGGCAGGCCCCGGCCGGGTTGGTGAGCGGGATTGCGCATTATGCGAGGCTGCAGGCGCGTTA CGGGACGGTGGAGAAGGTGAAGCGAGGAGAAGGAGATCGGTGGGACCAAGGTAACGGCGTGACGGCGAGGTTCCTGACGTATTGCAATCAGTTGAAGAGA GGGTTCGTTGGGGAGCTGAATAAGAAGATGAGGAACGGATACAGCGATGGGTTCTTCTTGGACTTGCTTGGGAAGAATGTCGACCATTTATGGAGTAACT ACAAGGAGACCTACCACATGTAA
AA sequence Show only first row Show all	>Lus10026585 pacid=23164388 polypeptide=Lus10026585 locus=Lus10026585.g ID=Lus10026585.BGIv1.0 annot-version=v1.0 MMSNQAFTLLLISLLTAVVRSQAFKSGSPVLYTVTNTANQTAGGARFDKQIGAHSAKQTMYAATRFVWILFNQTDDPAQRKNISQIDLFIDDNISGQNGT VVAARTTNASIHLSADYIGRYAANLRRQFNGIMYEEVAGIWQWDARGQAPAGLVSGIAHYARLQARYGTVEKVKRGEGDRWDQGNGVTARFLTYCNQLKR GFVGELNKKMRNGYSDGFFLDLLGKNVDHLWSNYKETYHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10019435 [exp]	1.7	0.7080
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Lus10009604 [exp]	2.0	0.7829
					Lus10011438 [exp]	2.8	0.7979
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	5.7	0.6944
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10018258 [exp]	7.4	0.6939
AT2G32645			Domain of unknown function (DU...		Lus10020591 [exp]	8.4	0.6311
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	10.7	0.6575
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	14.7	0.5933
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	19.4	0.5986
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	20.6	0.5986

Compare expression of checked genes

Lus10026585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.