Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 195 / 2e-62 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 187 / 4e-59 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G42900 40 / 0.0006 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013869 [exp] 439 / 4e-158 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 311 / 1e-107 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 308 / 1e-106 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 300 / 4e-103 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 291 / 6e-100 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 284 / 4e-97 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10001608 [exp] 277 / 4e-95 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 276 / 5e-94 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 273 / 1e-92 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299600 [exp] 208 / 2e-67 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 205 / 3e-66 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 200 / 2e-64 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 194 / 7e-62 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 179 / 4e-56 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10026586 pacid=23164370 polypeptide=Lus10026586 locus=Lus10026586.g ID=Lus10026586.BGIv1.0 annot-version=v1.0 ATGGCTCTCCAAACCTTCATTTCAGCCATTTGTGTGCTGATCATAACTGCCTGCAGCTTGGCCATCACCTCTCAAGGAGCAGGCGAAGATTCCAAACCTC TCCCCCCAACGGTATCATACATCGTACTCAACACGGCCAACCATACCGTAGGTGGATCCCGATTCAACAAACAGATCGGGGCCCACACCGCAGTCGTCAC AATGGTCGCAGCCACCAACTTCACGTGGACCATATTCAACCAGACTAGCCACCCGTCCGAAAGAAAAAACATAACCGAAATCACATTATTCATCGACAGC GACTACCTGCCGAACCTCCCCGCGACCCACACACAAAACACGTCGATCCACATAGACGCGAACTTCATCGGGAACTACACAGCCAACCTGAGGAGGCAGT TCAACGGCATAATCTACCAGGAGATAGCCGGAATTTGGCAGTGGACTGGGAAAGGCCAGGCTCCAGATGGGCTCGTAACGGGGATAGCCCATTACGTGAG GCTTCAGGCCCGTTACGGAACCATTGAGAAGGTGAAGCCCGGAGAAGGGGACCGTTGGGATCAAGGTAACGGCGTTACCGCGAGGTTTCTGGATTACTGC AATAAGCTGAAGAGAGGGTTCGTCGGGGAGCTGAATCAGAAGATGAGGCACGGTTATACTGATGGGTATTTCATGCAGATTTTGGGGAAGCCGGTTGATC TTTTGTGGAGTAATTACAAGGAGAGGCATGGACTTGATCGTGTTCACGGCCATCATCAGTAA
AA sequence Show only first row Show all	>Lus10026586 pacid=23164370 polypeptide=Lus10026586 locus=Lus10026586.g ID=Lus10026586.BGIv1.0 annot-version=v1.0 MALQTFISAICVLIITACSLAITSQGAGEDSKPLPPTVSYIVLNTANHTVGGSRFNKQIGAHTAVVTMVAATNFTWTIFNQTSHPSERKNITEITLFIDS DYLPNLPATHTQNTSIHIDANFIGNYTANLRRQFNGIIYQEIAGIWQWTGKGQAPDGLVTGIAHYVRLQARYGTIEKVKPGEGDRWDQGNGVTARFLDYC NKLKRGFVGELNQKMRHGYTDGYFMQILGKPVDLLWSNYKERHGLDRVHGHHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10026586 [exp]	0	1
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10037844 [exp]	1.0	0.8544
AT1G29010			unknown protein		Lus10015398 [exp]	12.7	0.7652
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10003845 [exp]	24.7	0.7431
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10022204 [exp]	30.6	0.7105
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	49.0	0.7556
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10035100 [exp]	82.1	0.7370
					Lus10011203 [exp]	117.0	0.7281
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	145.9	0.7064
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	257.0	0.6991

Compare expression of checked genes

Lus10026586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.