Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 96 / 3e-21 F-box family protein (.1) AT4G12560 92 / 5e-20 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G07870 88 / 6e-19 F-box and associated interaction domains-containing protein (.1) AT3G23880 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT4G22390 73 / 6e-14 F-box associated ubiquitination effector family protein (.1) AT3G23260 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT1G47790 67 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT4G21240 65 / 3e-11 F-box and associated interaction domains-containing protein (.1) AT1G50870 64 / 4e-11 F-box and associated interaction domains-containing protein (.1) AT3G08750 64 / 7e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013873 [exp] 613 / 0 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10038606 [exp] 147 / 6e-40 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 145 / 2e-39 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10013872 [exp] 140 / 1e-37 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10038603 [exp] 118 / 3e-29 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10031020 [exp] 106 / 2e-25 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 102 / 1e-23 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039593 [exp] 89 / 3e-20 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10012355 [exp] 91 / 1e-19 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121200 [exp] 154 / 1e-42 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 146 / 6e-40 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 124 / 1e-31 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 122 / 4e-31 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 110 / 2e-26 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 105 / 5e-25 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 103 / 3e-24 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 101 / 2e-23 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.001G318400 [exp] 100 / 3e-23 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 99 / 8e-23 AT3G06240 132 / 2e-34 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10026587 pacid=23164266 polypeptide=Lus10026587 locus=Lus10026587.g ID=Lus10026587.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTTCACTTGATGAAGAAATGCTGATAGACATCCTCACAAGACTGCCTCCCAAATCCCTCCTCCGTTGTCTCTCCGTCTCCAAATCCTTCC ACTCTCTCATCACCACCCGAACCTTCATCTCCGCCCACACAACTCACCGCCGCCGCCGGAACCTCCTGCTCCGTCACTACTCATGGAGCCACACCAGGGA GCGGCTCACAATTCATAATCACGATTACAGCTTTTTCAGCAGTCATGACGAGGAGCTGGATTTCGGGTTCCGAAGCTACGCCAAGTACTTCGAGATTGTA GGGTCGGTTAACGGGCTGATCTGCCTATGCGACACCCACCGGGTCATTTCCCACACTGTCTTCCTATGGAACCCGACAATCAGAAAATCGGTTGTCCTGC CGTCTCCATCCGTCGATTTCAAACGTGTCTGGAATTTCGTTCACGGCTTCGGGTTCGATTCCCGTACCTGGGACTACAAGGTCGTGAAAGTCACTAATCC TTCGCATTTACCGGTCTCCTCCTCCCAGGAAATTGAAATCTACGAACTGAGCAAAAACTCGTGGAGGAGGAGGAGAACAGAAAGTGATGCTGAAACGACG CCATATTGTAACCGGGTGATTTCCGAACTCTCGGGGCAAGCTTTCCTTCATGGAGCGATCCACTGGGTCGGGTACAGAAATCGGGCAGAGTTCAGGGGTT TGGGAATCGTGGCGTTCGATTTGGCAAGTGAGGGATTTCGAGAATTGAAGCTGCCGGAGTGTTTGGTTGAGCTGTCTACGCTTAAGTTGGGGTTAACGAC GGGGGCGGAATTGGAGGAAGGGCTTAGTTTGGTGGAGTATTATGGGGGAGGAGTGAGACGGAATCAGTGGGTTCAGCACGGCGGGTGCGGAGTGTGGGTG ATGAATGAATACGGAGTGGAGTCGTCCTGGGTGAAGAGGTTTGATGTTGAAGTTTGTGATGGCGGAGTGGGGAAAGCGCTGAGGCTAAGGAAGGATGAGG AATCGGCCGTGCGATTGTTGATGGTGTCTAGCGGCGGGGAGCTGGTGTGTTTGGAGGGAGATGGGAATGGTGGAATCGTTGGGTTGGGGATGGAAGGGAT ACCGCAATCGTTCCATTTGGAGGATCTTGTTGAGACCTTGGTTTTGTCTTCATTGTTTGGAGAGTGCGGCAAAAAAAGAGAGCTCAGTAGGAATGCAACA TTGATCTTAAACAGAAGACTTTGCGCAGCCTCACAAAGGCACAATTTACCTCGTTGA
AA sequence Show only first row Show all	>Lus10026587 pacid=23164266 polypeptide=Lus10026587 locus=Lus10026587.g ID=Lus10026587.BGIv1.0 annot-version=v1.0 MSSSSLDEEMLIDILTRLPPKSLLRCLSVSKSFHSLITTRTFISAHTTHRRRRNLLLRHYSWSHTRERLTIHNHDYSFFSSHDEELDFGFRSYAKYFEIV GSVNGLICLCDTHRVISHTVFLWNPTIRKSVVLPSPSVDFKRVWNFVHGFGFDSRTWDYKVVKVTNPSHLPVSSSQEIEIYELSKNSWRRRRTESDAETT PYCNRVISELSGQAFLHGAIHWVGYRNRAEFRGLGIVAFDLASEGFRELKLPECLVELSTLKLGLTTGAELEEGLSLVEYYGGGVRRNQWVQHGGCGVWV MNEYGVESSWVKRFDVEVCDGGVGKALRLRKDEESAVRLLMVSSGGELVCLEGDGNGGIVGLGMEGIPQSFHLEDLVETLVLSSLFGECGKKRELSRNAT LILNRRLCAASQRHNLPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	1.4	0.8261
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	3.5	0.8102
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	8.8	0.7422
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	9.8	0.7667
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	11.6	0.7342
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	15.9	0.7876
AT5G62960			unknown protein		Lus10027692 [exp]	19.7	0.7496
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	22.1	0.7604
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	26.1	0.7113
AT2G42760			unknown protein		Lus10007299 [exp]	30.4	0.7209

Compare expression of checked genes

Lus10026587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.