Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19500 111 / 1e-28 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G49830 95 / 1e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 87 / 9e-21 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 92 / 1e-20 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 84 / 1e-19 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 89 / 2e-19 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 84 / 6e-19 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 84 / 3e-18 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21340 82 / 1e-17 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 82 / 2e-17 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013874 [exp] 360 / 6e-125 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027064 [exp] 89 / 1e-21 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025599 [exp] 89 / 1e-21 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007613 [exp] 91 / 2e-20 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 90 / 2e-20 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025987 [exp] 89 / 7e-20 AT1G27660 119 / 6e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 88 / 2e-19 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 88 / 4e-19 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 87 / 1e-18 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094300 [exp] 122 / 1e-32 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 119 / 9e-32 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G112000 [exp] 96 / 5e-24 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.013G126800 [exp] 95 / 6e-24 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G230800 [exp] 94 / 1e-21 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 93 / 7e-21 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G129500 [exp] 92 / 9e-21 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 91 / 2e-20 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 89 / 7e-20 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 88 / 8e-20 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026589 pacid=23164283 polypeptide=Lus10026589 locus=Lus10026589.g ID=Lus10026589.BGIv1.0 annot-version=v1.0 ATGGCTGATGATGACCACCACCACCACCATCATCAGCCCACCGCAGTTACTGCTGGCGCTGCTGCTTTTTTTCTTCATCATCAGGAACAAGAACTTCATG GTGATGAGCAGGAAGATGACAACAATGGGGGTGGAGAAGAGGATCTGTTGTTAACAGATGGGCCCAACCACCACCACCCCACCACCTTCTCTCAGCTTCT CTTCTCCTCCAGTCATCACCAACCCCACAACGCTTCAGCAGCTACTACTTCTAGTTTTGGTCTAAACGACATTAATAGTATTTATCACCTCCACAACAAC ACAAGCAGCTCTTACCCACCTCAAATGCTCTGCTTTGGCTCTACTGATCCCCAAGGTGTCATCTGTGTCCTCCCTTCTCCTAAAATCAACACCATCACTC CCTCCTCTAATAGGAAACGAGAAGGGTTGACCCAGGAACAGAGTCTTAACTCTGTTGCAGTTAATAGTAGTAATGCTACGGACAGTACTAATTGTGGTCC TCCACCGGAAGCAAGGCAGAGGGCTAGCAAGAGGAGTAGGACGGACAAGTCCACTCCTTCTCCAAGGCCAAGGAAAGAGAAGCTTGGAGAAAGGATTGCC ACATTGCAGCAGTTGGTTTCACCTTTTGGCAAGACGGATACAGCATCAGTACTGCATGAAGCGATGGGATACATAAGATTCCTGCAAGACCAGATTCAGG TCCTCTGCTCCCCATACCTCCAACCTCCACCTCCTTCAACATCTGCTGCTTCACCCGGTTTCACCAATTACCAATGCAAATCCCACTTTGGTTTTGGTTC CTTCCTGGGAGGGATTTCTTTATCTTTACCATTGAAATGTGCTCGTTACCTCGCCTCGCCCTCTCCGGGTCATGGCACTCCCAACTGGTTATCTTATTCT TGGATCTGTGTTGTGACGAGATGA
AA sequence Show only first row Show all	>Lus10026589 pacid=23164283 polypeptide=Lus10026589 locus=Lus10026589.g ID=Lus10026589.BGIv1.0 annot-version=v1.0 MADDDHHHHHHQPTAVTAGAAAFFLHHQEQELHGDEQEDDNNGGGEEDLLLTDGPNHHHPTTFSQLLFSSSHHQPHNASAATTSSFGLNDINSIYHLHNN TSSSYPPQMLCFGSTDPQGVICVLPSPKINTITPSSNRKREGLTQEQSLNSVAVNSSNATDSTNCGPPPEARQRASKRSRTDKSTPSPRPRKEKLGERIA TLQQLVSPFGKTDTASVLHEAMGYIRFLQDQIQVLCSPYLQPPPPSTSAASPGFTNYQCKSHFGFGSFLGGISLSLPLKCARYLASPSPGHGTPNWLSYS WICVVTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	0	1
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	1.0	0.9903
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	2.4	0.9880
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	6.0	0.9879
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	7.7	0.9876
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	9.2	0.9875
					Lus10021217 [exp]	9.5	0.9858
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	11.4	0.9820
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	11.8	0.9855
					Lus10026293 [exp]	13.0	0.9836
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	14.8	0.9575

Compare expression of checked genes

Lus10026589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.