Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09550 52 / 5e-08 Ankyrin repeat family protein (.1) AT4G03460 51 / 2e-07 Ankyrin repeat family protein (.1) AT4G03500 51 / 2e-07 Ankyrin repeat family protein (.1) AT3G12360 48 / 1e-06 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 48 / 2e-06 ATANK1, ANK1 ankyrin-like1 (.1) AT5G35810 47 / 3e-06 Ankyrin repeat family protein (.1) AT1G03670 46 / 1e-05 ankyrin repeat family protein (.1) AT4G03440 44 / 5e-05 Ankyrin repeat family protein (.1) AT4G03480 43 / 6e-05 Ankyrin repeat family protein (.1) AT3G18670 42 / 0.0002 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013878 [exp] 148 / 3e-43 AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) Lus10025287 [exp] 56 / 5e-09 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10024440 [exp] 52 / 6e-08 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 52 / 9e-08 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 51 / 2e-07 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 49 / 7e-07 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 49 / 8e-07 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 49 / 8e-07 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10040335 [exp] 47 / 4e-06 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G106000 [exp] 97 / 4e-23 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 95 / 2e-22 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G108000 [exp] 93 / 7e-22 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G109150 [exp] 92 / 2e-21 AT4G03500 83 / 1e-16 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 91 / 4e-21 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 90 / 7e-21 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 90 / 7e-21 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 74 / 3e-15 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.011G133400 [exp] 69 / 9e-14 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1) Potri.019G106300 [exp] 65 / 4e-12 AT4G03500 100 / 2e-22 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026590 pacid=23164319 polypeptide=Lus10026590 locus=Lus10026590.g ID=Lus10026590.BGIv1.0 annot-version=v1.0 ATGTGGACAATGAACTCCCATGTGCAGATACGCACTAAGGCTCAACTTATCAAGGTTGGCTGTAAAACAGGCCAGAGAAACAGAATCTGCACAGAAGACA ATTCTGCCAGAGTAGAGAAGCTTAACAGCTTGGTTTCTGAGCTAAAGAGAGCACAGGAATCCCACTTGGTCGCTGCCACTCTCATGGCTATAGTTAGCTT TGCAACAGGATTCACCATGCCAGGAGGTTACTTCAGTGATCCGGACAAGCAGGGCGATGATAAGTTAGGCACCGCAATCTTATCAATCAAGGGTGCCTTC CAGTGGTTCATCATGGCGGATACATATGCACTGGTCTGCTCCCTGGCTGCTGTTTTGATTCACTTCATGTTGGCCATCCAAAGGAACAAGAGGAAGTATT GGATTCTGTTTACTGTGGCATCTAATCTTGTTATCGGTGCAATGGTTTCCATGGTGGTGGCCTTCATAAGTGCAACGTACCTTGTGTTGCCGCCGAGTTC CTCTGCTACTCAGGCTGCACCTTTGATGGTCGGCGGTGTGTTTTTCTTCATGTTCTTCATCATCATGAGAGTTGCTTCCCTTCAGACGTTGTACCGGAGC TCTACTCCACCTTTGAGCTTTGCATAG
AA sequence Show only first row Show all	>Lus10026590 pacid=23164319 polypeptide=Lus10026590 locus=Lus10026590.g ID=Lus10026590.BGIv1.0 annot-version=v1.0 MWTMNSHVQIRTKAQLIKVGCKTGQRNRICTEDNSARVEKLNSLVSELKRAQESHLVAATLMAIVSFATGFTMPGGYFSDPDKQGDDKLGTAILSIKGAF QWFIMADTYALVCSLAAVLIHFMLAIQRNKRKYWILFTVASNLVIGAMVSMVVAFISATYLVLPPSSSATQAAPLMVGGVFFFMFFIIMRVASLQTLYRS STPPLSFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34050			Ankyrin repeat family protein ...		Lus10026590 [exp]	0	1
					Lus10029489 [exp]	3.9	0.8671
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	6.5	0.8307
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	7.9	0.8307
					Lus10003695 [exp]	9.2	0.8307
					Lus10003774 [exp]	10.2	0.8307
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	11.2	0.8307
					Lus10018299 [exp]	11.3	0.6000
					Lus10033071 [exp]	12.1	0.8307
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	13.0	0.8307
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	13.7	0.8307

Compare expression of checked genes

Lus10026590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.