Plant FIBer expression Database

Lus10026591 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17972 118 / 1e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013879
[exp]
291 / 4e-101 AT2G17972 120 / 2e-34 unknown protein
Lus10014382
[exp]
42 / 6e-05 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Lus10023878
[exp]
43 / 9e-05 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G115000
[exp]
136 / 2e-40 AT2G17972 140 / 7e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10026591 pacid=23164423 polypeptide=Lus10026591 locus=Lus10026591.g ID=Lus10026591.BGIv1.0 annot-version=v1.0
ATGGTGTGCTACACGATACCAGGAATCCGCTTGCCTTGTGTTCCTTCAGTCCATCACAACTCTCCATACCACTCTTCCTTCTTCGACCGCCGGACTTCCT
CAGTCACCACCGTGCTGTCTCTCTCCTCGAAGAAACTCCCGCACTCTCGTACTCACCCTGTCTCTCCCCCTCGGTTTTGTACTTTCCTGTTTGATCGTCA
TCAGCTTGATAACGCCCTTTACGAGATACCAGAAAGTTCCACGACAGCTGCTGGCCAGAACAAAAGGATCCTCGAGAAACAAGGGGAGAATGCAGAGCCT
GTAAGGTTCAGGCGCCGCTCTTCTAAAAGGCGTGCTAGGCAGCGAGGAGAAGGAGGAGTCAACGGAGGAGCGGCATCACGAATGACCAAGGATCCGCCTA
AGAAATGGGAGGATATGAGCATGGGAGAGAAGGCAATGGAGCTTTACGTCGGGGAGAAAGGTGCGCTCTTCTGGCTCAACAAATTCGCTTACGCCTCCAT
TTTCATCGTCATCGGTGGCTGGATTGTATTCCGGTTCGTAGGACCGGCCTTGAATCTCTACCAGCTGGATGCTCCGCCTCTTCCTCCATCTGCCATGTTC
AAGGGCGAGGAATGA
AA sequence
>Lus10026591 pacid=23164423 polypeptide=Lus10026591 locus=Lus10026591.g ID=Lus10026591.BGIv1.0 annot-version=v1.0
MVCYTIPGIRLPCVPSVHHNSPYHSSFFDRRTSSVTTVLSLSSKKLPHSRTHPVSPPRFCTFLFDRHQLDNALYEIPESSTTAAGQNKRILEKQGENAEP
VRFRRRSSKRRARQRGEGGVNGGAASRMTKDPPKKWEDMSMGEKAMELYVGEKGALFWLNKFAYASIFIVIGGWIVFRFVGPALNLYQLDAPPLPPSAMF
KGEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17972 unknown protein Lus10026591
[exp]
0 1
AT2G31890 ATRAP RAP (.1) Lus10006144
[exp]
9.7 0.8287
AT5G15802 unknown protein Lus10022232
[exp]
12.7 0.8577
AT2G47210 MYB myb-like transcription factor ... Lus10034713
[exp]
14.4 0.8448
AT2G35500 SKL2 shikimate kinase-like 2, shiki... Lus10030990
[exp]
14.4 0.8716
AT2G17972 unknown protein Lus10013879
[exp]
16.3 0.8528
AT2G27680 NAD(P)-linked oxidoreductase s... Lus10006267
[exp]
16.4 0.8555
AT5G46420 16S rRNA processing protein Ri... Lus10011969
[exp]
21.2 0.8456
AT2G33180 unknown protein Lus10011764
[exp]
22.6 0.8190
AT3G26710 CCB1 cofactor assembly of complex C... Lus10031981
[exp]
26.5 0.8545
AT5G14970 unknown protein Lus10014506
[exp]
26.6 0.7687

Lus10026591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.