Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15020 489 / 5e-169 unknown protein AT5G64190 145 / 1e-37 unknown protein AT2G40390 126 / 5e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013880 [exp] 953 / 0 AT2G15020 516 / 1e-179 unknown protein Lus10010225 [exp] 112 / 4e-26 AT2G40390 555 / 0.0 unknown protein Lus10009844 [exp] 100 / 2e-22 AT2G40390 517 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094100 [exp] 531 / 0 AT2G15020 592 / 0.0 unknown protein Potri.010G183100 [exp] 143 / 4e-37 AT2G40390 590 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026592 pacid=23164310 polypeptide=Lus10026592 locus=Lus10026592.g ID=Lus10026592.BGIv1.0 annot-version=v1.0 ATGCTGGACGTTTGGTCTTGGATATCCGAGCTTCCTCTTTCCGAGGAATGGCAGCTTGATTCCGACTCCAACTCGTCAGGTGTGCTCATCTTCGAGCTTG CTAATTCTCATGTACTCGATCCAAGTCGGTCTCTCCACCTCCGAGCTGAACGCACCACTACTACTTCTCCACGACCCAACTCCACCCCTTCCGTCAATCT ATCCGTCTGCTTACGTGGCTTCTCGACCGCCACAGTCTGGGTGTCCGACACCTACCCGCTGGACTCCGACCAAACCAACAACAACTTCCTGCTCCCCTTA CTCCTCCAGCTCCTCCAAGAGATCATCACCCGGGCCCCCACGTCCTACAACCGCACCTGCCCGCGCTCCCAGTTCCAGAAGCTCCGACCCGAACCGGTCT CCTGGATCATCGACTCCCACTCTCCCGAGTCCTTCTCCAACTTCTTCAACCTCGTCTTCCTCACCCGTCTCTTCTGGTCTTGTGCACTCGACGCGCCATG TGAAGTCGGTTCTTTCTACCTGGACTCTCTCCTGGGCCCCAACATCCACTCCTTGTTGGGCCCACACCACGCGCCTGTCCTCCGCAAGTTCTTGGTCGCG GTGGGATCCGACGTGGAGCTCTCCTTCATGCGCACCCTCGGGTACATGTTAGCAAAATGGCTTATCTCTAGAGAGGTCACCGTGGTGAGGCCAGGTTTAC GTTCCATCGTCCCGCGGAATATTAGTCCAGCTCAGCAGCAACAGCTAGGATTCAGCTACGCTACAGAGGCTCACGGGTTCTGGACTCTGAAAGGCTACGC GCCTATTCCATCTATGAGGCTTACTCGCTTCAGAAGCAATAACGATTTCTTCTTCGTCTCTTCACCCTTTCTCGAACCGAACGAGTCCGTGTTGAAGTAC GCGCTAGCTCACCAGCAGTTGGAAGCGGTTATTCAGTTGGAATACTCCGTCACGTTCCACGAGTCGTACATCCAGGTCAGCGCCCGCGTGGACAACCTCC GCTTCCAAGTGGCGAAGCTTGGCTTCAACAAAAGCGATGACGACGTGGAAGAATACACTGAGGAAAGGCATTTCGTGTCGAGGGTCCGGGCTTGGGTTGG GCCGGAGGTTGGGGCTACGTACGTAGCGGGCTTGAGTTTGGGCCGGTCGACCCACAACGGAGAGAGCGAGACCACGGAGCAACAAATTCTGACGAAGGAC ATTTCGGACAATTTGTCGACCAGAAGAGCGAGGAAGGTGACAAGGATGAGGACGAAAGACTGGAGGTGGGACCAAGATGTGGAAGGGAACGCGGTCGTTT TCGATGCCGTCCTGTATGATAGCACCACGTGTCGTGAATATTATAACAGCAACGGGAGTGGGCCACGGTGGGGCGGAGGAGATGGGCCTAACAGGCCTTT CACGAAGACGAGAGGGCTGGTATTTGGCGGGGACGAGTACGGGAATGAGGTTGTGTGGAGGGTTGGGAAAGAAATGGAAGGGAGTGTGTTGAAGTGGAGA ATTGGAGGGCAAGTTTGGGTGAGTTATTTTCCATATCAAGTGAAGAGTTCTTATTTTGAGACTAGGTGTGTTGAGTGGTGTGATGAGGTTGATTTGCCTT TGATTCCTGGGAAATATGTGGATTAG
AA sequence Show only first row Show all	>Lus10026592 pacid=23164310 polypeptide=Lus10026592 locus=Lus10026592.g ID=Lus10026592.BGIv1.0 annot-version=v1.0 MLDVWSWISELPLSEEWQLDSDSNSSGVLIFELANSHVLDPSRSLHLRAERTTTTSPRPNSTPSVNLSVCLRGFSTATVWVSDTYPLDSDQTNNNFLLPL LLQLLQEIITRAPTSYNRTCPRSQFQKLRPEPVSWIIDSHSPESFSNFFNLVFLTRLFWSCALDAPCEVGSFYLDSLLGPNIHSLLGPHHAPVLRKFLVA VGSDVELSFMRTLGYMLAKWLISREVTVVRPGLRSIVPRNISPAQQQQLGFSYATEAHGFWTLKGYAPIPSMRLTRFRSNNDFFFVSSPFLEPNESVLKY ALAHQQLEAVIQLEYSVTFHESYIQVSARVDNLRFQVAKLGFNKSDDDVEEYTEERHFVSRVRAWVGPEVGATYVAGLSLGRSTHNGESETTEQQILTKD ISDNLSTRRARKVTRMRTKDWRWDQDVEGNAVVFDAVLYDSTTCREYYNSNGSGPRWGGGDGPNRPFTKTRGLVFGGDEYGNEVVWRVGKEMEGSVLKWR IGGQVWVSYFPYQVKSSYFETRCVEWCDEVDLPLIPGKYVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15020			unknown protein		Lus10026592 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10032369 [exp]	1.4	0.9304
AT2G15020			unknown protein		Lus10013880 [exp]	4.5	0.9300
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	4.7	0.8647
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	6.9	0.9197
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	7.3	0.9167
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	8.3	0.9203
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	8.9	0.9071
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	9.9	0.9148
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	10.2	0.9191
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	10.8	0.8910

Compare expression of checked genes

Lus10026592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.