Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013881 [exp] 179 / 4e-58 ND 37 / 0.003 Lus10020975 [exp] 97 / 5e-26 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1) Lus10025368 [exp] 95 / 4e-25 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026593 pacid=23164401 polypeptide=Lus10026593 locus=Lus10026593.g ID=Lus10026593.BGIv1.0 annot-version=v1.0 ATGACGACGATGAAGATGATCAGTCCGTACCAGAATGCTTCTGTGGCTTCCCCGCGAAACTACGCATGTCTCAAACCGCCAAGAATACACTCCGGTTTAT TCTACAACTGTCAAGGTTTCGACGATTGCAACTTCTTCCAGTGGTGTGATGAGCCAACTCAAACAGGAGATAAGCATTTCGACGAGCTAACCCGCTATCG TCACGAGTGCATTGCAATCCAGCAGAAGTACGAGAACCAAGTGCAGGAGCATGCGAACAAGAGGAGAAAATGGGCGACTGAAAAAGAGTTTCTTGTGTCT GAACTAGACAAAGTTCGAGCAGAGCGGGATGAGCTCAAGAAGAGGGCTAAACTCGTGGGGGAGTCTGATCTTATGCCAGCAGTGGATCCGATGCCAAGCA GTTCCAACGCCGGTAAGAGCGGCTGGCGGCGACGATATTTGCTATTGGAATCTCCGACGAAGTTGAATTGA
AA sequence Show only first row Show all	>Lus10026593 pacid=23164401 polypeptide=Lus10026593 locus=Lus10026593.g ID=Lus10026593.BGIv1.0 annot-version=v1.0 MTTMKMISPYQNASVASPRNYACLKPPRIHSGLFYNCQGFDDCNFFQWCDEPTQTGDKHFDELTRYRHECIAIQQKYENQVQEHANKRRKWATEKEFLVS ELDKVRAERDELKKRAKLVGESDLMPAVDPMPSSSNAGKSGWRRRYLLLESPTKLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026593 [exp]	0	1
					Lus10014857 [exp]	3.6	1.0000
					Lus10027374 [exp]	3.7	1.0000
					Lus10015823 [exp]	6.6	1.0000
					Lus10016593 [exp]	6.7	1.0000
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009470 [exp]	10.2	1.0000
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10015880 [exp]	13.6	1.0000
					Lus10016867 [exp]	13.7	1.0000
					Lus10015929 [exp]	17.0	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	18.3	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	19.3	1.0000

Compare expression of checked genes

Lus10026593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.