Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 1085 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029689 [exp] 1177 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 1162 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 1017 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 655 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 276 / 5e-86 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093900 [exp] 1333 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G299000 [exp] 1277 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 1153 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 1108 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 49 / 2e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026594 pacid=23164285 polypeptide=Lus10026594 locus=Lus10026594.g ID=Lus10026594.BGIv1.0 annot-version=v1.0 ATGCGGGTCCAAATAGTGGGCCGACATCCTCCTGCAACACAATTAAGATCCTTCGCCGGTTCATCCTCGGCAGGCCCGGTCCCTCTTCCTTCGGTTGCCG GCTTGCCGCCTCGCCGGTTTTCATTACCGACTTCACTCTCTCTCTGCAACAAAGTGCTGGAAGCAATGCAGGACGACGGTTGGGTCCACGTCCGCCGCCC CGCCGAGAAGGACTACTGGAGTCCAACTTCCGGCGACGGGGAGCCTTCTCCTTCTTCTTCCCAGCCGTTGAAGTTGATCTTCACCGCTCCGGCCAAGTAC TGGACCGACGCCATTCCCATCGGCAATGGCCGCCTCGGTGCTATGATTTGGGGCAATGTTGCCAAGGATACTCTCCAACTCAACGAGGATACACTGTGGA CAGGTGTTCCCGGAAATTACACTGATCCAGATGATCCAGCGGCTCTTTCCAAGGTCAGAAAGCTTGTTGACAACGGTCAATTCACTGAAGCTACTAAAGA AGCCACCAAATTGTCTGATCGTCCTTCTGAGGTTTATCAATTGCTTGGGGATATGGTACTTGAATTTGACACTTCACACCTCAAATATGATGAGAGGACT TATCACAGAGAACTGGATTTGGATACTGCTACTGCAACAGTCAAATACTCAGTCGGTGATGTTGAGTATACGAGGGAATATTTCGCTTCTAATCCTAATC AAGTCATTTTGACGAGGATTTCCGGAAGCAGAAAAGGTTCTTTGTCATTCACTCTTTACCTGGATAGCAAGATGCACCATCATTCATTTGTACAAGGCAA AAGTCAGATTGTGTTTCAAGGTAGCTGTCCAGGGAAAAGGATTCCACCCCGGTTGAATGCAGGCGATGACAATCCGAAGGGGATTCAGTACGCTGCAATG CTCGACTTGCAAATCGGTGAAGGCGGAGGAGTAGTAACTGCTGTGGATGATAGGAAGTTGAAAGTTGAAGGTGCGGATTGGGCTGTTATACTTCTGGTTG CTTCATCTTCATTTGATGGACCTTTCACGAAGCCTGTTGATTCCAAGAAAGATCCAACTTCAGATTGCCAAACTGCATTGGCTTCTTTGAGGAAGTTTTC GTATGATGACATACTTGCAAATCATTTGGATGATTATCAGAGTCTTTTTCATCGTGTTTCGCTCCAGCTCTCGAAAAGCTCTAAGAGTGTCTTACAGAGT GAAACTGCCACAGTATCAACAGCTGAGAGGGTGAAATCCTTTCAGAAGGATGAAGATCCATCTTTGGTGGAGCTTCTCTTCCAGTATGGTCGTTATCTGC TGATATCGTGTTCACAGCCTGGAACTCAGGTGGCGAATCTGCAGGGCATATGGAATATGGATATAGAGCCACCGTGGGATGGTGCTCAACACTTGAATAT CAATCTACAAATGAACTACTGGCCAGCTCTATCGTGTAATCTCAAGGAGTGTCAAGAACCATTATTTGATTATATTTCCTCCCTTTCAATCAACGGGAGC AAGACTGCCAAAGTGAGCTATGAAGTTGATGGTTGGGTTGCACATCAAGTGAGCGATATATGGGCAAAAACATCCCCAGACCGTGGAGAAGCTGTTTGGG CTTTTTGGCCAATGGGTGGAGCTTGGCTTTGTACTCACTTGTGGGAGCACTTTGTCTACACGATGGACACTGATTTCCTGAAAAATAAGGCATACCCTTT ATTGGAAGGATGTGCCCAGTTTCTGCTGGGCTGGTTAATCAAAGGACCTGGTGGATTTCTGGAAACTAATCCATCAACGTCTCCTGAACATATGTTCATT GCTCCAGATGGCAAGCAAGCAAGTGTGAGCTACTCATCGACAATGGACATTTCAATTATAAAAGAAATTTTCTCGGAAATTCTTTCTGCGGCTGAGATTT TAGGAAGAACGGACGATGAGCTCATTCAGAAAGTCCGTGATGCTCAACCACTGCTTCCACCTACTAAAATTGCCAGAGATGGTACCATTATGGAATGGGC ATTGGATTTTCAAGACCCGGAGATCCATCACAGGCATTTGTCTCACCTCTTTGGAGTGTTTCCTGGGCATACTATTACTCTTCAGAAAACTCCTGACCTC TGTAAAGCTGCAGCAAATACCCTTATAAAGAGAGGTGAGGTTGGTCCTGGATGGTCGACTATGTGGAAGGCTGCACTCTGGGCACGTTTACACAAAAATG AGGAAGCATATCGCATGGTTAAGCATTTGTTTGATCTGGTGGATCCTGCTCACGAGGATGAATATGAAGGAGGACTTTACAGTAATTTGTTCACCAGTCA CCCGCCGTTCCAGATTGATGCCAACTTTGGATTCTCGGCAGCAATCGCGGAAATGCTAGTTCAGAGCACCGTGAAGGACCTCTATCTACTCCCTGCTCTT CCTCGCGACAAGTGGGCAAATGGATGCGTGAAAGGACTCAAAGCGCGTGGCGGGGTAACGGTTAATGTATGCTGGAAAGAAGGCGACCTTCATGAAGTCG GTCTTTGGTCGACAAGTCGGAACTCTATTCAGCACCGCTTGCATTACAGAGAAAGGACTGTGAACGCTAGCTTATCGTCCGGTAAAGTATACACATTTAA CAGGGAGCTTAGGTGTATAAGAACCTTCTCCACCTCACTACTAGCTTCTTGTTGA
AA sequence Show only first row Show all	>Lus10026594 pacid=23164285 polypeptide=Lus10026594 locus=Lus10026594.g ID=Lus10026594.BGIv1.0 annot-version=v1.0 MRVQIVGRHPPATQLRSFAGSSSAGPVPLPSVAGLPPRRFSLPTSLSLCNKVLEAMQDDGWVHVRRPAEKDYWSPTSGDGEPSPSSSQPLKLIFTAPAKY WTDAIPIGNGRLGAMIWGNVAKDTLQLNEDTLWTGVPGNYTDPDDPAALSKVRKLVDNGQFTEATKEATKLSDRPSEVYQLLGDMVLEFDTSHLKYDERT YHRELDLDTATATVKYSVGDVEYTREYFASNPNQVILTRISGSRKGSLSFTLYLDSKMHHHSFVQGKSQIVFQGSCPGKRIPPRLNAGDDNPKGIQYAAM LDLQIGEGGGVVTAVDDRKLKVEGADWAVILLVASSSFDGPFTKPVDSKKDPTSDCQTALASLRKFSYDDILANHLDDYQSLFHRVSLQLSKSSKSVLQS ETATVSTAERVKSFQKDEDPSLVELLFQYGRYLLISCSQPGTQVANLQGIWNMDIEPPWDGAQHLNINLQMNYWPALSCNLKECQEPLFDYISSLSINGS KTAKVSYEVDGWVAHQVSDIWAKTSPDRGEAVWAFWPMGGAWLCTHLWEHFVYTMDTDFLKNKAYPLLEGCAQFLLGWLIKGPGGFLETNPSTSPEHMFI APDGKQASVSYSSTMDISIIKEIFSEILSAAEILGRTDDELIQKVRDAQPLLPPTKIARDGTIMEWALDFQDPEIHHRHLSHLFGVFPGHTITLQKTPDL CKAAANTLIKRGEVGPGWSTMWKAALWARLHKNEEAYRMVKHLFDLVDPAHEDEYEGGLYSNLFTSHPPFQIDANFGFSAAIAEMLVQSTVKDLYLLPAL PRDKWANGCVKGLKARGGVTVNVCWKEGDLHEVGLWSTSRNSIQHRLHYRERTVNASLSSGKVYTFNRELRCIRTFSTSLLASC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	1.0	0.9606
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	1.4	0.9566
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	2.2	0.9388
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	3.0	0.9447
AT3G63430			unknown protein		Lus10018750 [exp]	4.6	0.9125
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10039396 [exp]	4.7	0.9110
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	6.9	0.9364
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10025693 [exp]	7.1	0.9100
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	7.7	0.9167
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	8.4	0.9360

Compare expression of checked genes

Lus10026594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.