Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 570 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013884 [exp] 838 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026594 [exp] 654 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 632 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 535 / 3e-180 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 169 / 2e-47 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093900 [exp] 636 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G299000 [exp] 627 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 574 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 566 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 49 / 3e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026595 pacid=23164241 polypeptide=Lus10026595 locus=Lus10026595.g ID=Lus10026595.BGIv1.0 annot-version=v1.0 ATGGTTTCTCCTTCTCCCTGCAGCCACCATCACCTCCGCCCTCGTTTATCCTCTTCCCTCTTCCTCATTTCCTCCATTTCGTTTCTCCTCTTCACCGCCG CCACATATTCTTCTTCCCCCTCCTCCTCCTCCGGCGACGGCGGTGACCCCTTGAAGCTGACATTCACCGCCCCTGCAAAATACTGGACCGACGCTATCCC CATTGGCAACGGCCGCCTCGGCGCCATTGTCTGGGGCGGCGTGGTTAACGAAACTCTCCAGCTCAACGATGATACGTTATGGACCGGAGTTCCCGGGACC TACACAGATTCCAATGCTCCGGCGGCTCTAGCGGTGGTCAGAAAACTCGTCAATTCCGGCCAATACGCTGAAGCTTCCGCCGAGGCTATTAAACTCTCAG GAACTCCCTCTCAGATTTACCAATTGCTGGGAGACATAGTGCTTGAATTCGACGGTTCACACAAGAACTACGACCCCAAAACCTACCACAGAGAGCTGGA TTTGGACACCGCTACAGCAACCGTCAAATACACAGTCGGGGGAATCGAATACACGAGGGAGCATTTCGCTTCCAATCCTAATCAAGCAATCGTGACCAGG ATTTCAGCGAGCAGGCCTGGGTCTGTATCGTTTACTGTTCATATGGATAGTAAGATGAATCACACATCTTCACACGTAGAAGGGAAGCACCAGATTGTAT TGACAGGGAGTTGTAGAGGGATTCCGAAGGGAATTCAATTCACCGCAATGCTGGATCTGCAGATCGGAGGAGGCAATGGATCAGCAGTTATCCGAGAAGG TGGGAAGTTGAAGGTTGTTGGTGCGGATTGGGCGGTTCTGGTTCTTGTGGCTTCATCTTCATTTGACGGACCGTTCGTTAAACCGGTTGATTCGAAGAAG AATCCGACTTCTGATTGCCAGAAGGGGCTGAACTCGCTAGCTGGCGTGGGTGGTGCTCAACATTTGAACATCAATCTGCAAATGAACTACTGGCCAGCAC TGTCCTGCAATCTTAAGGAGTGTCAGGAGCCATTATTTGACTACATGTCTTCCCTCTCAGTGAACTATGGAGCAAATGGCTGGGTTGCACATCAGGTGAG CGACGTATGGGCGAAAACGTCTCCTGATTTTGGAGATGCGATATGGGCTATGTATCCATTGGGTGGATCTTGGCTTTGTACACACTTGTGGGAACATTAT AGTTATACAATGGACAAAGACTTCCTTGAGAAGAAGGCTTACCATTTGTTGGAAGGATGTGCTGAGTTTCTGCTAGACTGGTTAGTCGAAGGACCCGGAG GATATCTCGAAACCAATCCTTCAACTTCCCCGGAACATAAATTCATCGGTCCAGACGGGAAGCAAGCCAGTGTTAGCAACTCAACTACCATGGACATGTC AATCATAAGACAAGTCTTCTCAAACATTGTCTCTGCTGCTGAGGTTTTGGGAAGAAACAGTGATGAACTCATTCAGAAAGTTAGCCACGCCACAACTCGC CTTCCGCCCACTAAAATCGCCAAGGAGGGTACTGTAATGGAATGGGCGTTTGATTTCGAAGACCCGGAGCCTCAGCACAGACACGTTTCCCATCTCTTTG GGCTGTACCCTGGCCATACCATTACTCCAGGGGATACTCCAGAGCTCTGCAATGCTTCAGAAAACACTCTGATCAAGAGAGGTGTTGAAGGACCAGGATG GTCGACTGTGTGGAAAGCTGCACTATGGGCAAGGCTACAGAAGAGTGACAAGGCTTATCAGATGGTTAAGCATTTGTTTAACCTGGTGGACCCTGCTCAT GAAGGAGACTACGAAGGAGGAGTTTTTAGTAACTTGTTTACTGCTCACCCGCCGTTCCAGATCGATGCCAACTTGGGGTTCTCCGCAGCAATAGCGGAGA TGTTAGTACAGGGGACCGGAACTGATCTCTTCCTACTCCCAGCTCATCCGGGTAGTAAATGGCCAGATGGGTGCGCGAAGGGGTTAAGAGCGAGAGGAGG GGTGACTGTTTACCTGTGCTGGAAAAACGGCGAGCTTGAAGAAGCTGGCCTTTGGTCGACAAAAGGAAACTCGATCCAACAGTTGCATTATGGAGAAAAG ATGGTGAACGCAAGTATACTGTCATGTAATATGTACACATTCAATAGGGAGCTAACACTTACTAGAACAGAATCACTTTCGCAAGTAGATTCTTCTTGCT GA
AA sequence Show only first row Show all	>Lus10026595 pacid=23164241 polypeptide=Lus10026595 locus=Lus10026595.g ID=Lus10026595.BGIv1.0 annot-version=v1.0 MVSPSPCSHHHLRPRLSSSLFLISSISFLLFTAATYSSSPSSSSGDGGDPLKLTFTAPAKYWTDAIPIGNGRLGAIVWGGVVNETLQLNDDTLWTGVPGT YTDSNAPAALAVVRKLVNSGQYAEASAEAIKLSGTPSQIYQLLGDIVLEFDGSHKNYDPKTYHRELDLDTATATVKYTVGGIEYTREHFASNPNQAIVTR ISASRPGSVSFTVHMDSKMNHTSSHVEGKHQIVLTGSCRGIPKGIQFTAMLDLQIGGGNGSAVIREGGKLKVVGADWAVLVLVASSSFDGPFVKPVDSKK NPTSDCQKGLNSLAGVGGAQHLNINLQMNYWPALSCNLKECQEPLFDYMSSLSVNYGANGWVAHQVSDVWAKTSPDFGDAIWAMYPLGGSWLCTHLWEHY SYTMDKDFLEKKAYHLLEGCAEFLLDWLVEGPGGYLETNPSTSPEHKFIGPDGKQASVSNSTTMDMSIIRQVFSNIVSAAEVLGRNSDELIQKVSHATTR LPPTKIAKEGTVMEWAFDFEDPEPQHRHVSHLFGLYPGHTITPGDTPELCNASENTLIKRGVEGPGWSTVWKAALWARLQKSDKAYQMVKHLFNLVDPAH EGDYEGGVFSNLFTAHPPFQIDANLGFSAAIAEMLVQGTGTDLFLLPAHPGSKWPDGCAKGLRARGGVTVYLCWKNGELEEAGLWSTKGNSIQQLHYGEK MVNASILSCNMYTFNRELTLTRTESLSQVDSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	4.1	0.8830
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	4.9	0.8784
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	6.0	0.8752
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	6.7	0.8650
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	8.2	0.7946
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	9.2	0.7514
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	9.4	0.8683
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10024328 [exp]	11.0	0.8373
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	11.0	0.8074
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	11.2	0.8606

Compare expression of checked genes

Lus10026595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.