Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15000 94 / 2e-26 unknown protein AT4G34265 73 / 3e-18 unknown protein AT4G17310 52 / 7e-10 unknown protein AT5G47455 45 / 2e-07 unknown protein AT5G11630 40 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025365 [exp] 109 / 2e-32 AT2G15000 126 / 2e-39 unknown protein Lus10020971 [exp] 104 / 2e-30 AT2G15000 121 / 4e-37 unknown protein Lus10013885 [exp] 100 / 2e-28 AT2G15000 82 / 6e-21 unknown protein Lus10028954 [exp] 46 / 1e-07 AT4G17310 100 / 5e-29 unknown protein Lus10007477 [exp] 42 / 5e-06 AT4G17310 95 / 6e-27 unknown protein Lus10011623 [exp] 39 / 5e-05 AT5G11630 82 / 2e-22 unknown protein Lus10002035 [exp] 37 / 0.0005 AT5G11630 80 / 3e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298800 [exp] 94 / 2e-26 AT2G15000 78 / 4e-20 unknown protein Potri.009G093400 [exp] 93 / 4e-26 AT2G15000 73 / 4e-18 unknown protein Potri.017G068600 [exp] 52 / 7e-10 AT4G17310 94 / 2e-26 unknown protein Potri.001G333800 [exp] 45 / 4e-07 AT5G47455 54 / 1e-10 unknown protein Potri.006G237800 [exp] 43 / 2e-06 AT5G11630 99 / 8e-29 unknown protein Potri.004G154800 [exp] 37 / 0.0005 AT4G39300 97 / 1e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026596 pacid=23164256 polypeptide=Lus10026596 locus=Lus10026596.g ID=Lus10026596.BGIv1.0 annot-version=v1.0 ATGGCTTGGCGCAGTGGAGCTTCTTCCTTTTCCCGCTCCTTCATTTCCTCCGCCAGGTCATCCTCTACGCGCTCCTCTTCAGCTCCGCTTCCCCGCCTCC GTCCACCATCCACCTCCGCCCCTCGCATCCAGTCGTGGCGAGTCTCTTTCTCTCCTTCCAGGAACTTGGGAGAGCTAGGATGCGTCCAGTCGTTCTTGCC TCTGCACAGTGTGGTTGCCAATAGCCACCTCACTTCTCATATCAGTGCTAACCTGCGGGCTTTCTGCGAGCTGTCTCACGGTACCTTCTGCCGCACTTGT CAGGATCGCTAG
AA sequence Show only first row Show all	>Lus10026596 pacid=23164256 polypeptide=Lus10026596 locus=Lus10026596.g ID=Lus10026596.BGIv1.0 annot-version=v1.0 MAWRSGASSFSRSFISSARSSSTRSSSAPLPRLRPPSTSAPRIQSWRVSFSPSRNLGELGCVQSFLPLHSVVANSHLTSHISANLRAFCELSHGTFCRTC QDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15000			unknown protein		Lus10026596 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	2.0	0.9584
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	4.9	0.9533
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	5.2	0.9173
AT5G35400			Pseudouridine synthase family ...		Lus10027594 [exp]	5.3	0.9167
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	6.0	0.9391
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	6.7	0.9358
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	15.1	0.9386
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	16.7	0.9351
AT1G24310			unknown protein		Lus10015795 [exp]	18.8	0.9321
AT2G03640			Nuclear transport factor 2 (NT...		Lus10036918 [exp]	19.2	0.9300

Compare expression of checked genes

Lus10026596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.