Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66140 79 / 5e-18 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G80730 73 / 4e-16 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 72 / 8e-16 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G25160 70 / 6e-15 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 70 / 8e-15 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G14010 62 / 2e-12 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G57520 60 / 8e-12 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G67030 57 / 3e-10 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G01860 57 / 4e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 56 / 1e-09 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010388 [exp] 96 / 1e-24 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10003681 [exp] 81 / 4e-19 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10014350 [exp] 79 / 3e-18 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10028997 [exp] 77 / 5e-18 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10013243 [exp] 67 / 2e-13 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 67 / 2e-13 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10006960 [exp] 60 / 2e-11 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10018328 [exp] 59 / 3e-11 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10025471 [exp] 59 / 3e-11 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298700 [exp] 166 / 1e-52 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.009G093300 [exp] 151 / 5e-47 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.005G144500 [exp] 87 / 7e-22 AT1G24625 62 / 4e-12 zinc finger protein 7 (.1) Potri.004G084100 [exp] 82 / 2e-19 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.017G134800 [exp] 82 / 2e-19 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.010G102700 [exp] 81 / 7e-19 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 79 / 4e-18 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.006G261700 [exp] 76 / 7e-17 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 74 / 3e-16 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 74 / 3e-16 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026597 pacid=23164208 polypeptide=Lus10026597 locus=Lus10026597.g ID=Lus10026597.BGIv1.0 annot-version=v1.0 ATGTTCTTTCAGGAACAAGGCAATGAAATACTAGACGCAAGCAACAATCAAGACGTATGGTTGAACCTGAGCCTAGGTGGGGGGAGTTTGCATTCAGAAG CCACAGCGTGTGAAAATTCACAATCAAGACCCGTACCTGGCAAGGTTTTCTCATGCAATTTCTGCAGAAGAAAATTCTATAGTTCACAGGCACTGGGAGG TCACCAGAATGCTCACAAGAGAGAAAGAGGCACTGTCAGAAGATATCAGTCGCAAAGGATGATGATGATGATGGGTTTACCCATGCATACTCCTCCTCCA ATAGGAAGATCACTTGGTGTCAGACCCCATTCACTGGTTCACAAACCAAATAGAGATACAGCAAATATTAATGAGGTCAGTCGAGGGTTTGAATCATGCA AGCCGCCTTTCTCGGTTGAAGGTACAGTTGAATTGATGTGGCCAGGCAGCTTTCGCATGGATCCACCACCACCGGAGTCGCTTGATATTGACTTGAACCT CAAACTCTGA
AA sequence Show only first row Show all	>Lus10026597 pacid=23164208 polypeptide=Lus10026597 locus=Lus10026597.g ID=Lus10026597.BGIv1.0 annot-version=v1.0 MFFQEQGNEILDASNNQDVWLNLSLGGGSLHSEATACENSQSRPVPGKVFSCNFCRRKFYSSQALGGHQNAHKRERGTVRRYQSQRMMMMMGLPMHTPPP IGRSLGVRPHSLVHKPNRDTANINEVSRGFESCKPPFSVEGTVELMWPGSFRMDPPPPESLDIDLNLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	0	1
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	1.4	0.8765
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	1.4	0.8859
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	2.0	0.8645
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	2.4	0.8591
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	4.2	0.8647
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	4.2	0.8426
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	4.5	0.8633
					Lus10034884 [exp]	4.5	0.8423
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	5.7	0.8098
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	5.7	0.8489

Compare expression of checked genes

Lus10026597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.