Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43080 218 / 6e-70 CYCA3;1 Cyclin A3;1 (.1) AT1G47230 217 / 4e-69 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47210 216 / 5e-69 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 197 / 5e-62 CYCA3;3 Cyclin A3;3 (.1) AT1G44110 193 / 3e-59 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 189 / 8e-58 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT1G15570 179 / 9e-54 CYCA2;3 CYCLIN A2;3 (.1) AT1G80370 175 / 5e-52 CYCA2;4 Cyclin A2;4 (.1) AT5G11300 173 / 1e-51 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G25380 172 / 2e-51 CYCA2;1 cyclin a2;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013886 [exp] 348 / 1e-120 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10024822 [exp] 225 / 6e-72 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 224 / 1e-71 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10028544 [exp] 205 / 5e-64 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10029700 [exp] 204 / 1e-63 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 206 / 5e-63 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 182 / 2e-55 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10008103 [exp] 181 / 2e-54 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10026803 [exp] 106 / 2e-26 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093100 [exp] 234 / 2e-75 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G121500 [exp] 224 / 4e-72 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.014G021100 [exp] 220 / 2e-70 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G080000 [exp] 195 / 2e-59 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 195 / 3e-59 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.001G177100 [exp] 186 / 6e-56 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 182 / 9e-55 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.006G247200 [exp] 176 / 2e-52 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.018G034100 [exp] 172 / 2e-50 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.016G033000 [exp] 103 / 3e-25 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026598 pacid=23164331 polypeptide=Lus10026598 locus=Lus10026598.g ID=Lus10026598.BGIv1.0 annot-version=v1.0 ATGGAGGGCAACGCCCAGAACCGCCACCTCCCCGGTAGTAGTGTTGATTCGACTTCGGGATTGGTGACCAAGAAGTGCAGTGGCTCGTGTTTCATATACT ATCATCTCCGGTCACTGGAGGTTGAGGACATTAGGAGGCCCCTTGAGAATTACATGGAAACAGTTCAGAAAAATATGCTAGCGAGCATGCGAACAGTTCT GGTTGACTGGCTTGTGGAAGTTGCTGAGGAGTATAAGCTCGTCGCGGATACGCTATTTCTCTCGATATCTTATATTGACAGATACTTGTCCTCTAGATGT ATCGGCAAAGGCAAGCTCCAGCTTCTTGGTTTCTCTTGCATGCTTATTGCTTCGAAGTACGAAGAGATAAATCCTCGCCATGTTGATGATTTTTGCCACA TTACTGATAACACTTACACCAAAGAGGAGGTGGTACTGGAAATGGTGGCAGATGTACTAAAATTCTTGAATAACGAAACGAGTAATCCCTCTGCTAAAAA CTTCCTCAGAATTCTGACTAGAGTTGCAGAGAATGATGCTCTGGATCCCAATGAGCATCTTGAGTTCTTAAGTAGTTACCTTTGTGAGCTAAGCTTGTTG GAGTACGGGTGTGTTCGCTTCTTGCCATCGATGATTGCTGCATCGTCCGTTTTCTTGGCAAGATTCATAATCTCCCCACATCAGCAACCTTGGGTAACAA TTAAGAACAAAGTCGAAAGTAGCATTGATTAG
AA sequence Show only first row Show all	>Lus10026598 pacid=23164331 polypeptide=Lus10026598 locus=Lus10026598.g ID=Lus10026598.BGIv1.0 annot-version=v1.0 MEGNAQNRHLPGSSVDSTSGLVTKKCSGSCFIYYHLRSLEVEDIRRPLENYMETVQKNMLASMRTVLVDWLVEVAEEYKLVADTLFLSISYIDRYLSSRC IGKGKLQLLGFSCMLIASKYEEINPRHVDDFCHITDNTYTKEEVVLEMVADVLKFLNNETSNPSAKNFLRILTRVAENDALDPNEHLEFLSSYLCELSLL EYGCVRFLPSMIAASSVFLARFIISPHQQPWVTIKNKVESSID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	0	1
AT5G03050			unknown protein		Lus10012904 [exp]	5.5	0.7283
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	6.3	0.8048
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	7.3	0.7046
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	8.5	0.7746
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	9.2	0.7461
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	13.0	0.7387
					Lus10007991 [exp]	13.4	0.7381
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	14.1	0.6723
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	15.5	0.6788
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	22.9	0.6631

Compare expression of checked genes

Lus10026598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.