Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 92 / 4e-23 MATE efflux family protein (.1) AT1G12950 76 / 1e-17 RSH2 root hair specific 2 (.1) AT5G38030 74 / 8e-17 MATE efflux family protein (.1) AT3G26590 73 / 1e-16 MATE efflux family protein (.1) AT1G23300 71 / 9e-16 MATE efflux family protein (.1) AT4G25640 70 / 2e-15 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 67 / 2e-14 MATE efflux family protein (.1) AT5G65380 66 / 6e-14 MATE efflux family protein (.1) AT1G33110 65 / 1e-13 MATE efflux family protein (.1.2) AT3G21690 64 / 2e-13 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042130 [exp] 100 / 4e-26 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10002367 [exp] 81 / 5e-21 AT1G47530 191 / 1e-59 MATE efflux family protein (.1) Lus10002366 [exp] 82 / 8e-21 AT1G47530 192 / 2e-59 MATE efflux family protein (.1) Lus10016296 [exp] 80 / 6e-19 AT1G47530 423 / 4e-145 MATE efflux family protein (.1) Lus10010035 [exp] 79 / 1e-18 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10038850 [exp] 75 / 5e-17 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 74 / 1e-16 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036851 [exp] 74 / 1e-16 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 73 / 3e-16 AT1G23300 598 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132300 [exp] 86 / 7e-23 AT1G47530 196 / 4e-61 MATE efflux family protein (.1) Potri.008G187100 [exp] 74 / 8e-17 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 72 / 4e-16 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 68 / 7e-15 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 67 / 2e-14 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 65 / 9e-14 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G102100 [exp] 65 / 9e-14 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 65 / 9e-14 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 64 / 3e-13 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 64 / 4e-13 AT5G65380 479 / 1e-166 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10026599 pacid=23164225 polypeptide=Lus10026599 locus=Lus10026599.g ID=Lus10026599.BGIv1.0 annot-version=v1.0 ATGCAGACGTTCGTCGGATTCGTCGAAGAGCTGGAGCTGGCAGCCGTCGTCGCTGGCCTGGCCTTTGGCGACATGCTGGGGATGGGGAGTGCACTTGAGA CGCTTTGTGGGCAAGCCTATGGAGCTGGAGAGATAAGAATGCTGGGGATATACATGCAGAGATCTTGGGTTGTTTACGTTTGGTCTCCTCCGATTCTCTG TTTTTTCGGTGAAATTGTTCAAATTCCGAATGTTGCAGGTCTTTCAAATTCCGAATGTTGCAGGTCTTTCAAATTCTTAAATTAA
AA sequence Show only first row Show all	>Lus10026599 pacid=23164225 polypeptide=Lus10026599 locus=Lus10026599.g ID=Lus10026599.BGIv1.0 annot-version=v1.0 MQTFVGFVEELELAAVVAGLAFGDMLGMGSALETLCGQAYGAGEIRMLGIYMQRSWVVYVWSPPILCFFGEIVQIPNVAGLSNSECCRSFKFLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10026599 [exp]	0	1

Compare expression of checked genes

Lus10026599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.