Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14960 950 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT4G37390 938 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 927 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 877 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT4G27260 797 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 793 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT1G28130 671 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 603 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT5G13370 553 / 0 Auxin-responsive GH3 family protein (.1) AT1G23160 550 / 0 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013887 [exp] 1238 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 1001 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 941 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 761 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 758 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 704 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 686 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 419 / 5e-140 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 412 / 2e-137 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050300 [exp] 986 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 980 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 974 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 778 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 777 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 776 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 649 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.001G069000 [exp] 646 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 634 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.014G095500 [exp] 413 / 1e-137 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10026600 pacid=23164214 polypeptide=Lus10026600 locus=Lus10026600.g ID=Lus10026600.BGIv1.0 annot-version=v1.0 ATGGCAATTGATTCTTCTCTCCCAAACGCCCTTGGCCCTCCAGCATGCCAAAAAGACGCAAAAGCCCTTCAATTCATCGAGCACATGACCAAAAACCCTG ACGCCGTCCAAGGCCGAGTCATCGGCGAAATACTCAGGCGAAACGCGGACACTGAGTATCTCCGTAAGTTCAACCTCAACGGCGCAACCGACAGGAAAAC TTTCAAATCCAAAGTCCCCGTCGTCACCTACGAAGATCTCTTGCCGGAGATTCAGCGCATCGCCAACGGCGACCGCTCCCCCATCCTCTCCTCCCACCCA ATCTCCGAATTCCTCACAAGCTCGGGGACTTCAGCCGGAGAAAGGAAACTGATGCCGGCGATCCAGGAGGATCTGGACCGTCGCCAGCTGTTATACAGCT TGCTGACGCCGGTGATGAACCTCTACGTTCCGGGGCTAGACAAAGGGAAGGCTCTCTACTTCTACTTCATCAAGGCCGAATCAAAAACACCGGGCGGGTT ACTAGCCAGACCGGTTCTAACCAGCTACTACAAATCGGACCACTTCAAGAACCGACCGTACGACCCATACAACGTCATCACAAGTCCAACCGAGGCCATC CTCTGCGTTGACTCCTTCCAGAGCATGTACACCCAAATGCTATGCGGCCTAATCATGCGCGAACAAGTCCTCCGATTCGGCGCCGTTTTCGCCTCTGGGC TTCTGAAAGCCATCCGATTCCTCCAGCTCAACTGGGAGGAGCTGGCACACGACATCCGAACCGGAGCCTTGAACAAAAAAGTCAACGATCCGTCCATAAG GGAGTGCATGAAGAAGACTTTGACACCCAACCCAAGCCTCGCTGACTTTATTATCTCCGAGTGCTCTGACGCAAACTGGGAACGGATCGTACGGAGGATA TGGCCTAATACGAAGTACGTCGACGTGATTGTCACCGGAGCAATGGCACAGTACATTCCCACTCTGGAGTACTACACCGGCGGACTTCCGATGGCTTGCA CTATGTACGCATCCTCGGAGAGTTACTTCGGACTGAATTTAAACCCCATGTGCAAGCCGTCTGAAGTTTCCTACACGCTGATGCCTAACATGTGCTACTA CGAGTTTTTGCCACACTCGGAGGCAGAGGAGAAGGAGGAGGAATTGCAGCCAAGTCAACTAGTTGACCTGGCTGACGTGGAGGTTGGAAAGGAGTACGAG CTGATCATAACGACGTACGCGGGTCTATGCCGGTACCGGGTCGGGGACATACTCCGGGTCACCGGGTTCCACAACGCGGCCCCGCAATTCCGGTTCATAA GGAGGAAGAACGTGCTGCTGAGCATCGACTCGGATAAAACGGACGAGTCGGAGCTCCAGCGGGCAATCGAGGAAGCGTCGAGTTTTCTGAAGGAGTACAA GACGAGCGTGGTGGAGTACACGAGCTACGCGGATACAAAAGGTATTCCGGGGCATTACGTGATATTTTGGGAGCTGCTGGTGAAGGACGCGCGCCACGCT CCGACAAGGGAAGTGATGGAGAAGTGTTGCTTGGCGATGGAGGAGGCGTTGAATTCGGTTTACAGGCAAGGGAGGGTGATGGAGTCGATTGGGGCGCTGG AGATTAGGGTGGTTCAAAACGGTACGTTTGAGGAGCTTATGGATTACGCGATCTCGAGAGGCGCGTCGATTAATCAGTACAAAGTACCGAGGTGCGTGAG TTACACGCCCATAATGGAGCTGCTGGATGGGAGGGTTGTGTCTAGACATTTTAGCCCGTCGGTTCCTCATTGGTCGCCGGAAAGACGTCGTTAG
AA sequence Show only first row Show all	>Lus10026600 pacid=23164214 polypeptide=Lus10026600 locus=Lus10026600.g ID=Lus10026600.BGIv1.0 annot-version=v1.0 MAIDSSLPNALGPPACQKDAKALQFIEHMTKNPDAVQGRVIGEILRRNADTEYLRKFNLNGATDRKTFKSKVPVVTYEDLLPEIQRIANGDRSPILSSHP ISEFLTSSGTSAGERKLMPAIQEDLDRRQLLYSLLTPVMNLYVPGLDKGKALYFYFIKAESKTPGGLLARPVLTSYYKSDHFKNRPYDPYNVITSPTEAI LCVDSFQSMYTQMLCGLIMREQVLRFGAVFASGLLKAIRFLQLNWEELAHDIRTGALNKKVNDPSIRECMKKTLTPNPSLADFIISECSDANWERIVRRI WPNTKYVDVIVTGAMAQYIPTLEYYTGGLPMACTMYASSESYFGLNLNPMCKPSEVSYTLMPNMCYYEFLPHSEAEEKEEELQPSQLVDLADVEVGKEYE LIITTYAGLCRYRVGDILRVTGFHNAAPQFRFIRRKNVLLSIDSDKTDESELQRAIEEASSFLKEYKTSVVEYTSYADTKGIPGHYVIFWELLVKDARHA PTREVMEKCCLAMEEALNSVYRQGRVMESIGALEIRVVQNGTFEELMDYAISRGASINQYKVPRCVSYTPIMELLDGRVVSRHFSPSVPHWSPERRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10026600 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	6.2	0.9254
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	11.2	0.8860
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	12.4	0.9071
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	13.6	0.9188
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	14.1	0.9094
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	17.2	0.9098
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	18.2	0.9067
AT1G74790			catalytics (.1)		Lus10036662 [exp]	20.2	0.8934
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	20.3	0.8961
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	25.7	0.9067

Compare expression of checked genes

Lus10026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.