Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14910 394 / 1e-135 unknown protein AT5G14970 181 / 4e-53 unknown protein AT1G63610 90 / 1e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013888 [exp] 602 / 0 AT2G14910 380 / 8e-130 unknown protein Lus10014506 [exp] 157 / 9e-44 AT5G14970 329 / 5e-111 unknown protein Lus10032180 [exp] 153 / 7e-43 AT5G14970 327 / 4e-111 unknown protein Lus10013233 [exp] 91 / 6e-20 AT1G63610 389 / 1e-135 unknown protein Lus10030753 [exp] 90 / 1e-19 AT1G63610 397 / 6e-139 unknown protein Lus10016008 [exp] 82 / 5e-17 AT1G63610 409 / 1e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298200 [exp] 452 / 1e-158 AT2G14910 419 / 1e-145 unknown protein Potri.009G092800 [exp] 439 / 2e-153 AT2G14910 421 / 9e-147 unknown protein Potri.005G250000 [exp] 91 / 6e-20 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 86 / 3e-18 AT1G63610 431 / 3e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026601 pacid=23164309 polypeptide=Lus10026601 locus=Lus10026601.g ID=Lus10026601.BGIv1.0 annot-version=v1.0 ATGGCAACTTCCTCTGTTGCCACCTCTCGTCATTGTCTTCCTCTGATTCTCTCCTCTTCATCATCATCATCATCATCGTATTTGTCTGCATCTTCTTCAC CACTCCGCCATAATAGCCTTCCTTCTTTCTCTCTTTCCTTTTCTTCTTCTCCTCTTCGAATCACCATCTCTGTAGCAAACCCTAGAAAAATCCGATCCTT AATCCTAGTCTCATCCAATTCAGCTTCTTCCTCTCCTTCTTCTTCGTCTTTCCAGGATGATATCGGCTCCAACTCAATACCCCCCGCTGCTGATAATAAG TCAGTGCTATCAGAGTTGACAGAAGAGATAGAACCATTGGATGTTAGCCTCATCCAGAAAGATGTCCCCCCTACTACCTTGGATGCTATGAAGCGGACTA TTTCAGGCATGCTGGGCTTACTTCCATCAGACCGTTTTCAAGTTTCTATCGAGGCACTGTGGGAACCCCTCTCCAAGTTATTAGTCTCCTCAATGATGAC CGGATACACATTGCGAAATGCTGAATATAGGCTTTGCCTCGAAAGAAACATTGATATAGAAGAGAAAAATGCTGACAATTGTGATACTGAAAGTTGTGAA GTAGATGTGCTTGGAACAGTTAACAGTCCAATAAAAAATCAGCGTTCTGGAAATGATATCCAGTCTGAGAAACTAACCGAAGATTCAGCAGATGATAACG CTGTGAAAGGCCTTGGTGAAATTCCACTAGAGGCTCAGCAATATATTCTTCATTTGCAGTCTCGTTTATCATCTATGAAAAAGGAACTTCATGAAATCAA ACGGAGGAGTGATGCTCTTCAAATGCAACAGTTTGTTGGCGAAGAAAAGAATGATTTGTTGGACTACTTGCGATCTTTGAAGCCAGAAAAGGTAGCGGAG TTGTCTGAACCTACAACTGCGGAACTGAAAGACACGATTCACTCTGTTGTCCATGGTCTTCTTGCAACCCTTTCTCCAAAGATGCACTATAAGTCTCCAC CTCAATCAGAAACCACGTCGTCTGGAACTGTAGACCTCGACAGTGAAGATTTTGCAGAACTAGTTGAGAATACTTCACCTCCTCATTTCCAGGCCGAAAT CTCATTGACAAGGGACTATCTGGCACGCCTACTATTCTGGTGCATGCTGCTGGGACACTACCTGCGGGGCCTCGAGTATCGAATGGAGCTGATGGAACTT CTGTCCTTAAAAAATGAGTGA
AA sequence Show only first row Show all	>Lus10026601 pacid=23164309 polypeptide=Lus10026601 locus=Lus10026601.g ID=Lus10026601.BGIv1.0 annot-version=v1.0 MATSSVATSRHCLPLILSSSSSSSSSYLSASSSPLRHNSLPSFSLSFSSSPLRITISVANPRKIRSLILVSSNSASSSPSSSSFQDDIGSNSIPPAADNK SVLSELTEEIEPLDVSLIQKDVPPTTLDAMKRTISGMLGLLPSDRFQVSIEALWEPLSKLLVSSMMTGYTLRNAEYRLCLERNIDIEEKNADNCDTESCE VDVLGTVNSPIKNQRSGNDIQSEKLTEDSADDNAVKGLGEIPLEAQQYILHLQSRLSSMKKELHEIKRRSDALQMQQFVGEEKNDLLDYLRSLKPEKVAE LSEPTTAELKDTIHSVVHGLLATLSPKMHYKSPPQSETTSSGTVDLDSEDFAELVENTSPPHFQAEISLTRDYLARLLFWCMLLGHYLRGLEYRMELMEL LSLKNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14910			unknown protein		Lus10026601 [exp]	0	1
AT2G14910			unknown protein		Lus10013888 [exp]	7.9	0.7416
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Lus10038046 [exp]	9.2	0.7362
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	12.2	0.7280
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	19.1	0.7174
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	27.3	0.6885
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10032795 [exp]	29.0	0.6708
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	36.9	0.7128
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	37.5	0.6737
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	40.7	0.7087
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	46.4	0.6983

Compare expression of checked genes

Lus10026601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.