Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34280 778 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 59 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 5e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 49 / 6e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80710 50 / 7e-06 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G58230 48 / 3e-05 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013890 [exp] 1616 / 0 AT4G34280 758 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 56 / 2e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 56 / 2e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 54 / 2e-07 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 53 / 9e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 53 / 1e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003855 [exp] 52 / 1e-06 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 49 / 1e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 47 / 3e-05 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G092500 [exp] 1095 / 0 AT4G34280 775 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.001G297600 [exp] 1092 / 0 AT4G34280 784 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G051500 [exp] 828 / 0 AT4G34280 541 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 56 / 1e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 54 / 4e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 53 / 5e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 53 / 7e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 52 / 7e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 50 / 3e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G112500 [exp] 49 / 9e-06 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026603 pacid=23164338 polypeptide=Lus10026603 locus=Lus10026603.g ID=Lus10026603.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCCGGCATTACAACGTCAGAAAAAGTTTCCAGCTTGGAACAAATATATATTGACTCCTGTAGAAAACATTGGGTCTTGCCTAACGCCACCA TTCTATCCTGTTTCTTAGAGGCCGACAATAGGAAGTCCTCCAGTGATCCTTGCAGCCTGGACATATTCTTTGATGATCTCACTGATATGGATTTTCAACC TCTGCTTGACATATCTATGGCAATTGAAGCATCTGATATTGAAGCTGTTGATATACATAATGGTTCCTCTTGTCCATTAAACGTAGACTATGCTTTAGCA TTGATGCGTGCTTTTAACCAAAAGCTTAGGAGTGTTGATCTTCAAGATTCAACAAATGGAAAGGACGACCTCTTTAGGGAAATCTTTCGCAGAGGTATCC CATGTCAAGTCTTGAACCTGAGGTCTTCACGGATCAGGAAGCTTAACATGGTTGGGGAATTCACAAAGATGCATACACTCAATCTTGACTTTAGCACTTT GCTTACCAGCTTCCAGGAGGAATGTTTTACTCACATGCCAAACCTAACATACCTCTCGATGTGTGAGACGAGAGTCTCAAATCTCTGGACAACTGTTGCG GCACTTTCTAAGCTTTGTTCTTTAACAGAGCTTCGTTTTCAGAGGTGGGTCAGCTGCAATGACACTGCATCTACTTTGGTGTCATCTGATGGGAGTTCAG ATGACCAACTCAACATATCCAATATGCTTACAAGCAGCAGGAAACAACTAATTGATAATGTTGAGACTTCAAATCTTGTCTCTGGCACAGAAGAGTCACT GAGGAATGTTCTTCCATTCAATGATGCACGTGCAATTCAAGAACTCCGAAGCATGATGGAGGATCTGTCTGATGGGAGTGAAGCTGACTTTCCATTTCAT CACCAAGAAGCTGAATATGCAGGATTGTTTTCCAGCAGTCCTCTTGAACCGAATAGGCAAGCCATTTTACAGACTGAGGGGTCCACTAGCATGTTGTGGA ATCAGAATGAAGAACCTTGTGTTATAACAAGATATGTTGGAGATGTGGCTTTCTCGTATGTTTCATGCCACTCTTCACCCATATGCTATGAGAAACACTA TAGAGAATACATGATAGCTTCTCTGCCTAACCTGAAAGTTCTAGATAATTTATCTATCAGGAAGACTGACAGGGAAAGCGCTTCAGTTATATTTTCACAA TCCTTCGAGTACTTACCCTATAGACGAAAGGTTAAGGAGAGCGTTGTTAGTCTTCTGCATAAGCGTGAGATAAGAGCAATTCGTACTTGTCCGCATATTA ACCAGCAGAAGCCTTCTTCGCCATATGGGAGTTCACAATACTTCTACACACGTTCACTTAGTGCCGCCAAAGTGGGGTCTACTGCTTTGCCTTCCTTGCA TCCACTCTCTGTACCAAGTTGTGATTCGGCAGATAGAAGCAGAAGTTTTCGCCCAAGGCAGTTTGAGTACCATCCAACCATCTCTAGTCTCATGGTTTTC GGAACTTTAGATGGTGAAGTTGTTGTAATCAACCATGAGAATGAGAAAGTTGTTGGCTTTGTTCCTTACCTTGGAGCAATGAACAGTGTATTGGGCCTCT CGTGGCTAAAGAAGTATCCCTCAAAGCTTATAGCCGGATCGGATAATGGCTCACTGAAGTTATATGACATGGAGCATGTGCCGTCGACTGCAACTGGGAT GTATTCAAGTGCCCGTGTCGTCACTTTTGATGATTTCGAACAATTGACATCTGTCCACGTCAACTCCACGGACGAACTATTTCTTGCAAGTGGCTACTCC AAGAATGTAGCTTTATACGATATCAATTACGGAAGGAGAATACAGGTGTTCAATGACATGCACAGGGAACATATAAATGTTGTGAAGTTCTCAAACCATA ATCCATCAGTGTTTGCTACTTCGTCATTCGATCAAGATGTCAAACTTTGGGACTTGAGACAAAAACCAACGTGCCCTTGCTATACAAGTTCAAGCACCAA GGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCATTACCTTCTTGTCTCAGCTGTTGACAATGAGGTTCGACAACTTTTGGCTGTTGATGGAAGGCTT CATATGAATTTTGAAATACCACCTACTGGGAGCGCGCAGAACTACACTAGATCCTACTACATGAATGGGAGGGATTACATCATAAGCGGGAGTTGTGATG AACAAGTGGTCCGTGTTTGCTGCACTCAAACTGGGAGGCGTCTAAGAGACATTTCCTTGGAGGGTGAAAGTCTAGGATCTTCCATGTATGTGCAATCTTT GAGGGGCGATCCTTTCCGGGATTTCAACATGAGTGTCCTGGCAGCGTACATGAGACCAAGCTCAAAGTCCGAGATAGTCAAGGTGAGCTTAGTAGCATCA TCTGAGAAACCAAAGGAAGAGTGTGGCAGTTTCCAGTCCAGACCGTCCAACAGAATGGGAGGTTGA
AA sequence Show only first row Show all	>Lus10026603 pacid=23164338 polypeptide=Lus10026603 locus=Lus10026603.g ID=Lus10026603.BGIv1.0 annot-version=v1.0 MAAPGITTSEKVSSLEQIYIDSCRKHWVLPNATILSCFLEADNRKSSSDPCSLDIFFDDLTDMDFQPLLDISMAIEASDIEAVDIHNGSSCPLNVDYALA LMRAFNQKLRSVDLQDSTNGKDDLFREIFRRGIPCQVLNLRSSRIRKLNMVGEFTKMHTLNLDFSTLLTSFQEECFTHMPNLTYLSMCETRVSNLWTTVA ALSKLCSLTELRFQRWVSCNDTASTLVSSDGSSDDQLNISNMLTSSRKQLIDNVETSNLVSGTEESLRNVLPFNDARAIQELRSMMEDLSDGSEADFPFH HQEAEYAGLFSSSPLEPNRQAILQTEGSTSMLWNQNEEPCVITRYVGDVAFSYVSCHSSPICYEKHYREYMIASLPNLKVLDNLSIRKTDRESASVIFSQ SFEYLPYRRKVKESVVSLLHKREIRAIRTCPHINQQKPSSPYGSSQYFYTRSLSAAKVGSTALPSLHPLSVPSCDSADRSRSFRPRQFEYHPTISSLMVF GTLDGEVVVINHENEKVVGFVPYLGAMNSVLGLSWLKKYPSKLIAGSDNGSLKLYDMEHVPSTATGMYSSARVVTFDDFEQLTSVHVNSTDELFLASGYS KNVALYDINYGRRIQVFNDMHREHINVVKFSNHNPSVFATSSFDQDVKLWDLRQKPTCPCYTSSSTKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRL HMNFEIPPTGSAQNYTRSYYMNGRDYIISGSCDEQVVRVCCTQTGRRLRDISLEGESLGSSMYVQSLRGDPFRDFNMSVLAAYMRPSSKSEIVKVSLVAS SEKPKEECGSFQSRPSNRMGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	0	1
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	1.0	0.9359
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	4.5	0.9311
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	5.5	0.9188
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	8.1	0.9200
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	8.2	0.9189
AT1G71110			unknown protein		Lus10013492 [exp]	8.5	0.9014
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	8.8	0.9179
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10023290 [exp]	9.7	0.8665
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	10.4	0.9143
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	12.0	0.9178

Compare expression of checked genes

Lus10026603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.