Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 231 / 8e-74 Protein of unknown function (DUF620) (.1) AT1G49840 203 / 7e-63 Protein of unknown function (DUF620) (.1) AT1G27690 153 / 2e-44 Protein of unknown function (DUF620) (.1) AT1G79420 94 / 2e-22 Protein of unknown function (DUF620) (.1) AT5G05840 76 / 4e-16 Protein of unknown function (DUF620) (.1) AT3G55720 72 / 8e-15 Protein of unknown function (DUF620) (.1) AT5G06610 67 / 4e-13 Protein of unknown function (DUF620) (.1) AT5G66740 66 / 8e-13 Protein of unknown function (DUF620) (.1) AT1G75160 62 / 4e-11 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013891 [exp] 339 / 3e-116 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 216 / 4e-68 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 214 / 3e-67 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10028070 [exp] 91 / 4e-22 AT3G19540 104 / 1e-21 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 84 / 7e-19 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 83 / 3e-18 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 69 / 2e-13 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 68 / 3e-13 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 63 / 1e-11 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297500 [exp] 268 / 2e-88 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 253 / 1e-82 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 204 / 1e-63 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 106 / 4e-27 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 104 / 2e-26 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 85 / 5e-19 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 83 / 1e-18 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 71 / 3e-14 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 68 / 3e-13 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 67 / 7e-13 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026604 pacid=23164299 polypeptide=Lus10026604 locus=Lus10026604.g ID=Lus10026604.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAGCAAGGCTTCTTTTCCGCTCTCAAGGGCGAAGTGGTCAGAGGACTTTCCCCTTCCCGCTCCCGCTCCTGCAGTCCTGCCCGCTCCGCTT CCCCCTTCTCGGGTCTCCTCCGCCGCAAGAAAGGCGGCGGCGGCGGCGGGAAGACCTACGTTTACCAGCCGGAGCCGCTGATCGGGAGATCCGGTAGCTT GAGGCCAGTGGTAGGTGAAACCCTGACGCCGTTGATGGAAGGTCCCGATCCCGACGGAGAATGCAACCCGAAACCCTCCGGGTCGGGTTTGGGTCAGTGG ATGAAAGGACAGCTCTCCAGGACGCCTTCCGTGGCTGGCTCCGCCGCGGCGGCTTACAAAAGGTCTGATCTGAGGCTGCTACTTGGTGTCATGGGTGCGC CGTTGGCTCCGGTGCACGTTAGCTCCATGGACCCTTTGCCTCTGCTCAGCATTAAAGACACTCCCATTGAAACTTCATCTGCTCAGTACATATTGCAGCA GTACACAGCTGCATCTGGAGGGCAGAAGCTGCAGAACTCCATCCGGAATGCTTACGTGATGGGGAAGATTAAGATGATAACCTCCGAGTTCGAGACAGCC ACAAAAGTGGTGAAGAATCGTAACGGAAAGTGGTGA
AA sequence Show only first row Show all	>Lus10026604 pacid=23164299 polypeptide=Lus10026604 locus=Lus10026604.g ID=Lus10026604.BGIv1.0 annot-version=v1.0 MEKKQGFFSALKGEVVRGLSPSRSRSCSPARSASPFSGLLRRKKGGGGGGKTYVYQPEPLIGRSGSLRPVVGETLTPLMEGPDPDGECNPKPSGSGLGQW MKGQLSRTPSVAGSAAAAYKRSDLRLLLGVMGAPLAPVHVSSMDPLPLLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYVMGKIKMITSEFETA TKVVKNRNGKW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10026604 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	5.1	0.8714
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	8.7	0.8506
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	12.6	0.7905
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	17.8	0.8668
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	23.8	0.8376
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	26.8	0.8493
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	30.1	0.8316
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10009822 [exp]	31.7	0.8145
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	38.9	0.8300
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	41.9	0.8350

Compare expression of checked genes

Lus10026604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.