Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 405 / 1e-141 Protein of unknown function (DUF620) (.1) AT1G49840 401 / 6e-140 Protein of unknown function (DUF620) (.1) AT1G27690 363 / 9e-126 Protein of unknown function (DUF620) (.1) AT5G05840 275 / 3e-91 Protein of unknown function (DUF620) (.1) AT1G79420 272 / 3e-90 Protein of unknown function (DUF620) (.1) AT5G06610 262 / 5e-87 Protein of unknown function (DUF620) (.1) AT3G55720 235 / 2e-75 Protein of unknown function (DUF620) (.1) AT5G66740 229 / 4e-74 Protein of unknown function (DUF620) (.1) AT1G75160 218 / 1e-69 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013891 [exp] 501 / 9e-180 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 397 / 3e-138 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 338 / 4e-115 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 266 / 1e-87 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 263 / 4e-86 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10015972 [exp] 254 / 3e-83 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 252 / 8e-83 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 254 / 1e-82 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 253 / 2e-82 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297500 [exp] 434 / 4e-153 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 418 / 6e-147 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 410 / 2e-143 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 288 / 7e-97 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 285 / 1e-95 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 283 / 2e-94 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 282 / 6e-94 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 273 / 2e-91 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 264 / 8e-88 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 249 / 6e-82 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10026605 pacid=23164220 polypeptide=Lus10026605 locus=Lus10026605.g ID=Lus10026605.BGIv1.0 annot-version=v1.0 ATGAATCCAGACATGTGGTATGTTGAGCTTGCTGTGGGTGGCAGCAAGGTTCATGCTGGCTGCAATGGGAAACTTGTTTGGCGCCACACACCTTGGCTTG GCGCCCACACTGCCAAAGGACCGGTTCGACCCCTTCGTCGTGCTCTTCAGGGTCTTGATCCAAGAACCACAGCTAGTTTATTCGCTGATGCAAGGTGCAT AGGGGAGAAGAAGATCAACGGGGAAGATTGCTTTATCCTGAAGCTGGGTGCTGATCCCGGGACATTGAAGGCAAGGAGTGAAGGTCCAGCTGAGATTATA AGGCACGTTCTGTTCGGCTACTTCAGTCAAAGGACTGGACTTCTTGTTCACATGGAGGATTCACATTTGACCCGAATCCAATCCAACGGTGGTGATGCAG TCTACTGGGAGACCACAATCAATTCGTTCCTGGAAGATTACAGACCCGTGGAAGGAATAATGATCGCCCATTCAGGGCATTCTGTGGTGACCCTGTACAG ATTTGGGGAGGTGGCTATGAGCAATTCGAAGACGAAGATGGAAGAAGCTTGGACCATTGAGGAAGTGGCTTTCAATGTTCCGGGTCTCTCAGTTGACTGT TTCATCCCTCCTGGAGATCTCAGGTCAGGTTCCGTCAGTGAAACCTGTGAAAGTTGCGGCGATAGGGAAATCTCAAGATATGTGCATGGACAACATGTGG AAGATGGAGCTGCAAAAGGCTAA
AA sequence Show only first row Show all	>Lus10026605 pacid=23164220 polypeptide=Lus10026605 locus=Lus10026605.g ID=Lus10026605.BGIv1.0 annot-version=v1.0 MNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADARCIGEKKINGEDCFILKLGADPGTLKARSEGPAEII RHVLFGYFSQRTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGHSVVTLYRFGEVAMSNSKTKMEEAWTIEEVAFNVPGLSVDC FIPPGDLRSGSVSETCESCGDREISRYVHGQHVEDGAAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10026605 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10038855 [exp]	35.7	0.6723
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	51.0	0.6719
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10015420 [exp]	53.7	0.6855
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036336 [exp]	68.1	0.6047
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	204.0	0.6158

Compare expression of checked genes

Lus10026605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.