Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 535 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 533 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 355 / 9e-117 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 350 / 5e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 350 / 7e-115 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 345 / 3e-113 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 335 / 3e-109 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 310 / 3e-99 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030460 [exp] 826 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 815 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 743 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 726 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026607 [exp] 706 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 699 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 696 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030457 [exp] 693 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030458 [exp] 679 / 0 AT1G14185 481 / 5e-167 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 613 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 607 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 584 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 346 / 2e-113 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 342 / 2e-111 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 340 / 6e-111 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 338 / 1e-110 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 263 / 9e-83 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 59 / 3e-10 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10026606 pacid=23164312 polypeptide=Lus10026606 locus=Lus10026606.g ID=Lus10026606.BGIv1.0 annot-version=v1.0 ATGACATCGAATGTCGACGAGGTAGCAGGAAAGTCCTTCGATTACATCGTGATAGGTGGAGGAGCAGCCGGCTGCCCTCTTGCCGCTACCCTCTCTCAGA AATTCTCCGTTCTACTCATCGAACGTGGTGGGTCGCCATATGGGAACCCATGGATAACAGAGGAGCGCTTCCTCGGGTTCCCATTGCTCCAAACTGACGA GTTCTCGTCGGTCTCCCAATCAATCACTACTAAGGAAGGAGTAACATTCCACAGAGGGAGAGTCCTTGGAGGGACAACAGCCATAAATGGAGCGTTTTAC AGTAGAGCTAGTGACAGATTCGTCATGAAATCGGGTTGGGATAAACGGTTGGTGAAGGAATCTTACGAATGGGTTGAATCTAAAATCATTACTAAACCAG CTGTGCTGTCAAAGTGGCAAGCTGCTGTCAGGTCAGGATTCCTTGAAGCAGGAATCTTTCCTGACAACGGATTCACCTGGGAACACATCCAAGGAACGAA GCTCGGCGGGTCCACGTTTGATTCACGGAGCAAGAGACATACCTCTGCTGATCTTCTGCAGGCGGGAAGACCCGAGAACATCAAAGTTCTGTTGAATGCT ACGGTCAAGAGTGTCATATTCAACAACGGAGAATCAGAAAAGACCACTGCTCGTGGGATCCGATTCATAAGCAGCCATGGTACCGGAGATAGAACCTATG AAGTTTACCTTAACCAACCAGCAAATTCAACTTGTTCGTCCGGAGACGTGATATTATCAGCCGGGGCATTAGGCAGCCCTCAGATCCTCCTGTTGAGCGG CATCGGACCAAAACCCCATCTCGACCAATTCAACATCCCACTTGTCCTCGAGTCGAACCACGTGGGACTCGAAGTGCAAGACAACCCAGGAATCGTCATC TTGGTCGGTTCTAAACCGGGACACCAGCTCCCGGAGAGACCACAAGTTGCAGGAATAACAAAAGGATTCAACTTCATCATCGAAAGCCTCATCACATCAC TAACCTTCAACGCTACAGGGAATATTTTATTGATCAAGCTAGCATTCCCTGAATCCAGAGGGAAGCTGGAACTGAACTCGACCGATCCTCGGAAGAACCC TGAAGTTTCATACAACTACCTCGAGACAGAGAAAGACATGAATGGATGTGTGGAGATGGCCAAGTTGGCAATGACCGTTGCGAAGTCTCTATCTTCGGAG ACAAACGTGGTGTCGAATCCTGATGAGCTACGGGCTTACTGCAGGAAGAATGTCACTAGTTACTCCCATTACCATGGTGGGTGTAATGTTGGATCAGTTG TTGATTCGGATTATAGAGTGGTTGGTGTAGATGGTTTGAGAGTTGTGGATGGATCGAATTTTCTCGAGTCGCCTGGGACGAATCCGATGGCTACTCTTAT GATGCTTGGCCGGTATCAAGGGATCAAGATTCTTGGTGAGAGGATGAAATGA
AA sequence Show only first row Show all	>Lus10026606 pacid=23164312 polypeptide=Lus10026606 locus=Lus10026606.g ID=Lus10026606.BGIv1.0 annot-version=v1.0 MTSNVDEVAGKSFDYIVIGGGAAGCPLAATLSQKFSVLLIERGGSPYGNPWITEERFLGFPLLQTDEFSSVSQSITTKEGVTFHRGRVLGGTTAINGAFY SRASDRFVMKSGWDKRLVKESYEWVESKIITKPAVLSKWQAAVRSGFLEAGIFPDNGFTWEHIQGTKLGGSTFDSRSKRHTSADLLQAGRPENIKVLLNA TVKSVIFNNGESEKTTARGIRFISSHGTGDRTYEVYLNQPANSTCSSGDVILSAGALGSPQILLLSGIGPKPHLDQFNIPLVLESNHVGLEVQDNPGIVI LVGSKPGHQLPERPQVAGITKGFNFIIESLITSLTFNATGNILLIKLAFPESRGKLELNSTDPRKNPEVSYNYLETEKDMNGCVEMAKLAMTVAKSLSSE TNVVSNPDELRAYCRKNVTSYSHYHGGCNVGSVVDSDYRVVGVDGLRVVDGSNFLESPGTNPMATLMMLGRYQGIKILGERMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10026606 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	4.2	0.7937
AT5G36930			Disease resistance protein (TI...		Lus10027920 [exp]	5.0	0.7545
					Lus10037474 [exp]	9.9	0.6844
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	14.7	0.7684
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10042791 [exp]	15.4	0.7505
					Lus10025503 [exp]	15.8	0.7678
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	20.0	0.7660
					Lus10013963 [exp]	25.0	0.7508
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	25.3	0.7489
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	31.2	0.7354

Compare expression of checked genes

Lus10026606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.