Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14190 585 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 581 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 376 / 1e-124 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 374 / 1e-123 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 368 / 3e-121 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 366 / 1e-120 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 358 / 1e-117 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 313 / 7e-100 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030457 [exp] 868 / 0 AT1G14185 589 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030459 [exp] 729 / 0 AT1G14185 605 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10026606 [exp] 707 / 0 AT1G14190 554 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030461 [exp] 696 / 0 AT1G14185 596 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012816 [exp] 684 / 0 AT1G14190 539 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030456 [exp] 683 / 0 AT1G14185 634 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10030460 [exp] 681 / 0 AT1G14185 555 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10032641 [exp] 672 / 0 AT1G14185 608 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10012817 [exp] 639 / 0 AT1G14185 545 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168100 [exp] 640 / 0 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 619 / 0 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 610 / 0 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 378 / 2e-125 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G111500 [exp] 375 / 5e-124 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.003G039000 [exp] 370 / 4e-122 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G200800 [exp] 363 / 5e-119 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 271 / 2e-85 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 67 / 3e-13 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10026607 pacid=23164410 polypeptide=Lus10026607 locus=Lus10026607.g ID=Lus10026607.BGIv1.0 annot-version=v1.0 ATGATGTTACCCCTGAAGGTTTTTGTCTATGGTGATCACAGGCTTCTTGCAGCTTTCCCCCTGCTGCTGCTGCTCATTCTGCTTCATTCATCTCATTCTT CTGCCGGAACGGTTCCTTACATGACATCAGACATGAGCGAGATATCCGGCAAGTCCTTCGACTACATAATAGTAGGCGGAGGGGCGGCAGGCTGTCCTCT GGCAGCCACCCTTTCGGAGAAATTCTCCGTTCTGCTAATTGAACGGGGCGGGTCCCCGTACGGGAACCCAAGTGTAACTGACAAGCGCTTCTACGGCTTG TCTTTACTCCAGACGGACGAATTCTGGTCCCTGGCCCAATCGTTCACTTCCGAAGAAGGGGTCACGAACCGGAGAGGAAGGGTCCTCGGAGGATCCACAG CCATAAATGCGGCGTTCTACAGCCGAGCCAGTGACAAATTCGTTGCGGAATCGGGCTGGGATAAAAGGCTGGTGAAGGAATCTTATGAGTGGGTGGAATC TAAGATTGTCACTAAACCTGAGAAGCTGTCAGGGTGGCAAGCTGCTGTCAGGTCAGGATTTCTCGAGGCGGGAATCCTTCCTGACAACGGATTCACCTGG GATCATGTCGTGGGGACGAAGATTGGCGGGTCTACATTCGATAATCGGGGGCAGAGACGTACCTCTGCCGATCTTCTAAGGATGGGAAGGCCGGAAAACA TCAGAGTTCTGTTGAATACTACGGTGAAGAGTGTCATATTCGACCATGGAGAATCAAACAAACCCATTGCTCGGGGCATCCGATTCATAAGCAGCGGAAA CGACACCGGATATCGAACCTATGAAGCTTATCTAACTCCTTCCTCAGGTGACGTTATATTATCAGCAGGGGCATTAGGCAGTCCTCAAATCCTCCTACTA AGCGGCATCGGACCAAAAACCCATCTCGCCCAACTCGGCATCCCACTCGTTTTCGAATTGAATCGAGTGGGACGCGACGTCCAAGACAACCCGGGAATCT CCATCCCGGTCGGTTCAAAACCCGAACGCCGGTTCCCGGACTCACCACAAGTAGCAGGAATAACAAAAGGATTCAACTTCATCATCGAAGCAGGCATAGT GCCGACATCCCTCAACACCACGAGGAACCGGGTATCGATCAAGCTAGCGTTCCCGGAATCCACGGGAAAGCTCGAGCTGAACTCGACCGATCCCAGGAAG AACCCCGTGGTTTCGTACAACTACCTGACGACACAAAAAGACATGGACGGGTGCGTCGAGATGGTCAGACTGGCGGACACAGTCATCAAGTCCCGGCCCG TGACTATGTTCATGGGTGGGGATGTAGAAACCAACCTGACATCGAATCCTGACGAGTTGCGGACTTACTGCAGGACCAATGTCAGGACTTACTATCATTA CCACGGCGGGTGTGTGGTCGGGTCGGTTGTCGATGAGGATTACAAAGTGGTTGGTGTCGATGGTTTGAGAGTCGTCGATGGGTCGACTTTCCTCGAGTCT CCCGGGACGAATCCGATGGCTACGGTTCTGATGCTTGGTAGATATCAAGGGATCAAGATCCTTGTTGAGAGGATGAAATGA
AA sequence Show only first row Show all	>Lus10026607 pacid=23164410 polypeptide=Lus10026607 locus=Lus10026607.g ID=Lus10026607.BGIv1.0 annot-version=v1.0 MMLPLKVFVYGDHRLLAAFPLLLLLILLHSSHSSAGTVPYMTSDMSEISGKSFDYIIVGGGAAGCPLAATLSEKFSVLLIERGGSPYGNPSVTDKRFYGL SLLQTDEFWSLAQSFTSEEGVTNRRGRVLGGSTAINAAFYSRASDKFVAESGWDKRLVKESYEWVESKIVTKPEKLSGWQAAVRSGFLEAGILPDNGFTW DHVVGTKIGGSTFDNRGQRRTSADLLRMGRPENIRVLLNTTVKSVIFDHGESNKPIARGIRFISSGNDTGYRTYEAYLTPSSGDVILSAGALGSPQILLL SGIGPKTHLAQLGIPLVFELNRVGRDVQDNPGISIPVGSKPERRFPDSPQVAGITKGFNFIIEAGIVPTSLNTTRNRVSIKLAFPESTGKLELNSTDPRK NPVVSYNYLTTQKDMDGCVEMVRLADTVIKSRPVTMFMGGDVETNLTSNPDELRTYCRTNVRTYYHYHGGCVVGSVVDEDYKVVGVDGLRVVDGSTFLES PGTNPMATVLMLGRYQGIKILVERMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	6.0	0.7874
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	6.3	0.8141
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	8.9	0.7613
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	12.0	0.7247
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	12.5	0.7701
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	28.9	0.7345
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	31.6	0.7429
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	39.2	0.7003
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	39.2	0.7311
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	42.0	0.7113

Compare expression of checked genes

Lus10026607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.