Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26710 140 / 2e-39 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026044 [exp] 184 / 2e-55 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10014335 [exp] 184 / 2e-55 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000400 [exp] 159 / 3e-46 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.005G001200 [exp] 152 / 1e-43 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03950 [flax] [poplar] tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain
Representative CDS sequence Show only first row Show all	>Lus10026608 pacid=23164392 polypeptide=Lus10026608 locus=Lus10026608.g ID=Lus10026608.BGIv1.0 annot-version=v1.0 ATGAGGGTGCAGGGGAGAAGGCGGCGACTTACACGAAGAGCTTATGGATATATAGACCAGGCTGATGCTCGGAGCGTATCGGCGAATGAAGAAGTGACAT TGATGGATTGGGGGAATGTTATTGTGCAGGAAATTGTGAAGGATGATAGTGGGAATGTGAAGCAGTTGGTTGGAGATCTGCATTTGGAAGGATCTGTGAA AGCTACTAAGCTGAAGCTAACTTGGCTGCCTGCGATCAATGACTTGCTGGACGAAAAGGAGAAGCGGAATCTCCATGATGTGCTTAACTCCTGTACAAAG AAGGAGGTTCCTGTTCTTGGCGATTCGAACATTCGGAACTTGAAGCACGGAGAGGTAGTGCAACTAGAGAGGAAAGGCTACTTCATATGTGATGTTCCTT TCGCCATAGCTTCATATGTGATGTTCCTTTCGCCATAG
AA sequence Show only first row Show all	>Lus10026608 pacid=23164392 polypeptide=Lus10026608 locus=Lus10026608.g ID=Lus10026608.BGIv1.0 annot-version=v1.0 MRVQGRRRRLTRRAYGYIDQADARSVSANEEVTLMDWGNVIVQEIVKDDSGNVKQLVGDLHLEGSVKATKLKLTWLPAINDLLDEKEKRNLHDVLNSCTK KEVPVLGDSNIRNLKHGEVVQLERKGYFICDVPFAIASYVMFLSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026608 [exp]	0	1
AT1G75280			NmrA-like negative transcripti...		Lus10042968 [exp]	4.2	0.7227
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	37.5	0.6477
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	103.5	0.5781
AT4G34660			SH3 domain-containing protein ...		Lus10028784 [exp]	125.5	0.5962
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	165.4	0.5989
					Lus10024028 [exp]	239.9	0.5770
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Lus10027414 [exp]	244.4	0.5759
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	245.2	0.5798

Compare expression of checked genes

Lus10026608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.